Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060672.seq
(691 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 63 1e-10
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 54 7e-08
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 54 7e-08
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 50 2e-06
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 49 3e-06
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 47 1e-05
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 41 9e-04
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 41 9e-04
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 41 9e-04
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 38 0.006
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 38 0.008
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 37 0.011
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 36 0.033
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 34 0.10
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 33 0.18
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 33 0.24
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 33 0.24
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 33 0.24
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 32 0.31
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 32 0.31
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 32 0.31
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 31 0.54
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 31 0.72
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 31 0.72
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 30 1.3
At1g47330.1 68414.m05240 expressed protein contains Pfam profile... 30 1.3
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 30 1.3
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 30 1.7
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 29 2.2
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 29 2.9
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 29 2.9
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 29 2.9
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 29 2.9
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 29 3.8
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 29 3.8
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 29 3.8
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 29 3.8
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 29 3.8
At2g33420.1 68415.m04096 expressed protein 28 5.1
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 28 6.7
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 6.7
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 27 8.9
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 27 8.9
At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger) fa... 27 8.9
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 27 8.9
At2g25460.1 68415.m03049 expressed protein 27 8.9
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 27 8.9
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 63.3 bits (147), Expect = 1e-10
Identities = 44/137 (32%), Positives = 55/137 (40%)
Frame = +3
Query: 264 DSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGR*GS*SYSIL*RSKFS*LCA 443
D L PF KNFY P V + EVEEYR E+TV G+ F
Sbjct: 52 DLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVL 111
Query: 444 TRCKDNGLQRTDAYSSSRLADSMSGKNLVGVLKRVPAKRWPTSCQPLCT*TTNRLFRRGD 623
K G S +M G++L+G+ + K + + GD
Sbjct: 112 EEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGD 171
Query: 624 GPIALVLGATRELAQQI 674
GPI LVL TRELA QI
Sbjct: 172 GPIVLVLAPTRELAVQI 188
Score = 53.6 bits (123), Expect = 1e-07
Identities = 20/42 (47%), Positives = 29/42 (69%)
Frame = +1
Query: 382 GVEVHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 507
G ++ ++ F + FPDYV + VK G+ EPTPIQ+QGWP+
Sbjct: 91 GKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPM 132
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/25 (68%), Positives = 23/25 (92%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINNQPPIS 613
+TGSGKTL+Y+LPAIVH+N QP ++
Sbjct: 144 ETGSGKTLSYLLPAIVHVNAQPMLA 168
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 54.4 bits (125), Expect = 7e-08
Identities = 20/42 (47%), Positives = 31/42 (73%)
Frame = +1
Query: 382 GVEVHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 507
G +V ++ F++ANFPD + + + +G+ EPTPIQAQGWP+
Sbjct: 157 GRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPM 198
Score = 48.0 bits (109), Expect = 6e-06
Identities = 35/134 (26%), Positives = 54/134 (40%)
Frame = +3
Query: 273 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGR*GS*SYSIL*RSKFS*LCATRC 452
+L F KNFY PTV + +V YR +++V GR + + F
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 453 KDNGLQRTDAYSSSRLADSMSGKNLVGVLKRVPAKRWPTSCQPLCT*TTNRLFRRGDGPI 632
G + ++ G++L+G+ + K L + + DGPI
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPI 240
Query: 633 ALVLGATRELAQQI 674
L+L TRELA QI
Sbjct: 241 VLILAPTRELAVQI 254
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/26 (61%), Positives = 23/26 (88%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINNQPPISE 616
+TGSGKTLAY+LPA+VH++ QP + +
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQ 235
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 54.4 bits (125), Expect = 7e-08
Identities = 20/42 (47%), Positives = 31/42 (73%)
Frame = +1
Query: 382 GVEVHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 507
G +V ++ F++ANFPD + + + +G+ EPTPIQAQGWP+
Sbjct: 157 GRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPM 198
Score = 48.0 bits (109), Expect = 6e-06
Identities = 35/134 (26%), Positives = 54/134 (40%)
Frame = +3
Query: 273 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGR*GS*SYSIL*RSKFS*LCATRC 452
+L F KNFY PTV + +V YR +++V GR + + F
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 453 KDNGLQRTDAYSSSRLADSMSGKNLVGVLKRVPAKRWPTSCQPLCT*TTNRLFRRGDGPI 632
G + ++ G++L+G+ + K L + + DGPI
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPI 240
Query: 633 ALVLGATRELAQQI 674
L+L TRELA QI
Sbjct: 241 VLILAPTRELAVQI 254
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/26 (61%), Positives = 23/26 (88%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINNQPPISE 616
+TGSGKTLAY+LPA+VH++ QP + +
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQ 235
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 49.6 bits (113), Expect = 2e-06
Identities = 38/139 (27%), Positives = 55/139 (39%)
Frame = +3
Query: 258 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGR*GS*SYSIL*RSKFS*L 437
D + +PF KNFY + + + EV YR E+ V G+ ++ +
Sbjct: 480 DHSKIEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSK 539
Query: 438 CATRCKDNGLQRTDAYSSSRLADSMSGKNLVGVLKRVPAKRWPTSCQPLCT*TTNRLFRR 617
K ++ + L MSG++ +GV K K L
Sbjct: 540 ILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEA 599
Query: 618 GDGPIALVLGATRELAQQI 674
GDGPI LV+ TREL QQI
Sbjct: 600 GDGPIGLVMAPTRELVQQI 618
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINNQPPI 610
+TGSGKTL ++LP + HI +QPP+
Sbjct: 574 KTGSGKTLGFVLPMLRHIKDQPPV 597
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 48.8 bits (111), Expect = 3e-06
Identities = 34/139 (24%), Positives = 57/139 (41%)
Frame = +3
Query: 258 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGR*GS*SYSIL*RSKFS*L 437
D S+ +P NK+FY+ ++ + E +YR + VSG FS
Sbjct: 179 DHSSIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQ 238
Query: 438 CATRCKDNGLQRTDAYSSSRLADSMSGKNLVGVLKRVPAKRWPTSCQPLCT*TTNRLFRR 617
+ K ++ A L +SG++++G+ K K + +R
Sbjct: 239 IMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQR 298
Query: 618 GDGPIALVLGATRELAQQI 674
+GPI ++ TRELA QI
Sbjct: 299 DEGPIGVICAPTRELAHQI 317
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 382 GVEVHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIV 510
G +VH ++ FE+ F + +K Y++PT IQ Q PIV
Sbjct: 220 GFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIV 262
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINNQPPI 610
+TGSGKT A++LP IVHI +QP +
Sbjct: 273 KTGSGKTAAFVLPMIVHIMDQPEL 296
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 46.8 bits (106), Expect = 1e-05
Identities = 37/139 (26%), Positives = 54/139 (38%)
Frame = +3
Query: 258 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGR*GS*SYSIL*RSKFS*L 437
D + +PF KNFY + + + V YR E+ V G+ ++ +
Sbjct: 347 DHSKIEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSK 406
Query: 438 CATRCKDNGLQRTDAYSSSRLADSMSGKNLVGVLKRVPAKRWPTSCQPLCT*TTNRLFRR 617
K ++ + L MSG++ +GV K K L
Sbjct: 407 ILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEA 466
Query: 618 GDGPIALVLGATRELAQQI 674
GDGPI LV+ TREL QQI
Sbjct: 467 GDGPIGLVMAPTRELVQQI 485
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINNQPPI 610
+TGSGKTL ++LP + HI +QPP+
Sbjct: 441 KTGSGKTLGFVLPMLRHIKDQPPV 464
Score = 35.1 bits (77), Expect = 0.044
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 382 GVEVHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIV 510
G +V IQ++ + + +K + Y++P PIQAQ PI+
Sbjct: 388 GKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPII 430
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 40.7 bits (91), Expect = 9e-04
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +1
Query: 382 GVEVHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 507
G +V + FE FP + + V + G+ PTPIQAQ WPI
Sbjct: 150 GGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPI 191
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHI 592
+TGSGKTL Y++P +H+
Sbjct: 203 KTGSGKTLGYLIPGFLHL 220
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 40.7 bits (91), Expect = 9e-04
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +1
Query: 382 GVEVHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 507
G +V + FE FP + + V + G+ PTPIQAQ WPI
Sbjct: 150 GGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPI 191
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHI 592
+TGSGKTL Y++P +H+
Sbjct: 203 KTGSGKTLGYLIPGFLHL 220
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 40.7 bits (91), Expect = 9e-04
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +1
Query: 382 GVEVHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 507
G +V + FE FP + + V + G+ PTPIQAQ WPI
Sbjct: 150 GGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPI 191
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHI 592
+TGSGKTL Y++P +H+
Sbjct: 203 KTGSGKTLGYLIPGFLHL 220
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +1
Query: 304 IHILQFS-KDHHMKSKSTEIITR*L*VGVEVHNXIQYFEEANFPDYVQQGVKTMGYKEPT 480
+HI + S K + K II G ++ I+ F++ FP V +K G +PT
Sbjct: 115 LHIRKMSSKQRDLIRKQWHIIVN----GDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 481 PIQAQGWPIVCLER 522
PIQ QG P++ R
Sbjct: 171 PIQVQGLPVILAGR 184
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 37.5 bits (83), Expect = 0.008
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINNQPPISE 616
+TGSGKT A++LP + +I+ PP+SE
Sbjct: 358 ETGSGKTAAFVLPMLAYISRLPPMSE 383
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 382 GVEVHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIVCLER 522
G + ++ +EE+ + + V+ GYK+P+PIQ P+ +R
Sbjct: 305 GSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQR 351
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 621 DGPIALVLGATRELAQQI 674
+GP A+V+ TRELAQQI
Sbjct: 388 EGPYAVVMAPTRELAQQI 405
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 37.1 bits (82), Expect = 0.011
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 412 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIVCLER 522
FE + P + + + + G+ PTPIQAQ WPI R
Sbjct: 437 FESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSR 473
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIV 586
+TGSGKTL Y++PA +
Sbjct: 480 KTGSGKTLGYLIPAFI 495
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 35.5 bits (78), Expect = 0.033
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 382 GVEVHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIV 510
G ++ I+ F + FP + + +K G PTPIQ QG P+V
Sbjct: 89 GEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVV 131
Score = 30.3 bits (65), Expect = 1.3
Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 3/128 (2%)
Frame = +3
Query: 297 FYDPHPTVLKRSPYEVEEYRNNHEVTVSGR*GS*SYSIL*RSKFS*LCATRCKDNGLQRT 476
++ P V K S +++ R +TV+G KF KD G+
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 477 DAYSSSRLADSMSGKNLVGVLKRVPAKRWPTSCQPLCT*TTNRLFR---RGDGPIALVLG 647
L +SG++++G+ K + + G+GPIALV+
Sbjct: 121 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVIC 180
Query: 648 ATRELAQQ 671
+RELA+Q
Sbjct: 181 PSRELAKQ 188
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 542 TGSGKTLAYILPAIV 586
TGSGKTL ++LP I+
Sbjct: 143 TGSGKTLVFVLPMII 157
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +2
Query: 518 KEFSWRTQTGSGKTLAYILPAIVHINNQPPIS 613
K+ + +TG+GKT+A++LPAI + PP S
Sbjct: 420 KDVLAKAKTGTGKTVAFLLPAIEAVIKSPPAS 451
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 533 RTQTGSGKTLAYILPAIVHINNQPPISER 619
R +TG GKTLA++LP + + N P S+R
Sbjct: 139 RARTGQGKTLAFVLPILESLVNGPAKSKR 167
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2
Query: 518 KEFSWRTQTGSGKTLAYILPAIVHINNQPPIS 613
K+ + +TG+GKT+A++LP+I + PP S
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPAS 149
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 518 KEFSWRTQTGSGKTLAYILPAIVHINNQPPISER 619
K+ R +TGSGKTLAY+LP + + + +S++
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKK 117
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 412 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIV 510
FE N V +K GYK PTPIQ + P++
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLI 62
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2
Query: 518 KEFSWRTQTGSGKTLAYILPAIVHINNQPPIS 613
K+ + +TG+GKT+A++LP+I + PP S
Sbjct: 92 KDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTS 123
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 32.3 bits (70), Expect = 0.31
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +1
Query: 382 GVEVHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIVCLER 522
GV H F E N + + +T+GYK+PTPIQA P+ R
Sbjct: 161 GVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGR 205
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 32.3 bits (70), Expect = 0.31
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 436 YVQQGVKTMGYKEPTPIQAQGWPIV 510
Y+ + + +G+KEPTPIQ Q PI+
Sbjct: 151 YILRNLAELGFKEPTPIQRQAIPIL 175
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 31.5 bits (68), Expect = 0.54
Identities = 12/18 (66%), Positives = 17/18 (94%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHI 592
+TGSGKTLA+ +PAI+H+
Sbjct: 159 KTGSGKTLAFGIPAIMHV 176
Score = 31.1 bits (67), Expect = 0.72
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 403 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIV 510
++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 115 LKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFL 148
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 31.1 bits (67), Expect = 0.72
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 451 VKTMGYKEPTPIQAQGWPIVCLER 522
V + G+ P+PIQAQ WPI R
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNR 267
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHI 592
+TGSGKTL Y++P +H+
Sbjct: 274 KTGSGKTLGYLIPGFMHL 291
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 31.1 bits (67), Expect = 0.72
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 542 TGSGKTLAYILPAIVHINNQPPISER 619
TG+GKT+AY+ P I H+ P +R
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDR 101
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 194 LEDLEDLVGKKNSLEVRTCVARLGFCFTPTF 286
+ D++ +GK V C AR+G CF+ T+
Sbjct: 530 VSDIKTWMGKFKDKNVAKCAARMGLCFSSTY 560
>At1g47330.1 68414.m05240 expressed protein contains Pfam profile
PF01595: Domain of unknown function
Length = 527
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 416 KKQIFLIMCNKV*RQWVTKNRRLFKLKAGR*YVWKEFSWRTQTGSGKTLAYILPA 580
K ++F C K Q+ + +FK++ G K + Q GSGKT PA
Sbjct: 332 KDELFKDSCRKPKAQFEVSEKEVFKIETGDAKSGKSENGEEQQGSGKTSLLAAPA 386
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +2
Query: 533 RTQTGSGKTLAYILPAIVHINNQPPISER 619
++ TGSGKTLAY+LP + I P++E+
Sbjct: 153 QSYTGSGKTLAYLLPILSEIG---PLAEK 178
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam domain
PF04931: DNA polymerase V
Length = 1306
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -1
Query: 295 FLLKGWSETESQSGDACSDLQRILFSHQILQILQIYCH 182
+L + + E +Q+G + Q +LF ++L +L+IY H
Sbjct: 982 YLAQIFKEKRNQAGGETAQSQLVLFKLRVLSLLEIYLH 1019
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINNQ 601
Q+GSGKTLAY++P I + +
Sbjct: 419 QSGSGKTLAYLVPVIQRLREE 439
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 536 TQTGSGKTLAYILPAI 583
+ TGSGKTLAY+LP +
Sbjct: 156 SHTGSGKTLAYLLPIV 171
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 382 GVEVHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIVCLER 522
G +V + F + + D + ++ Y PTP+Q PI+ ER
Sbjct: 143 GGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAER 189
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 382 GVEVHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIVCLER 522
G +V + F + + D + ++ Y PTP+Q PI+ ER
Sbjct: 143 GGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAER 189
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 518 KEFSWRTQTGSGKTLAYILPAI 583
K+ +TGSGKTLA+++PA+
Sbjct: 127 KDVLGAARTGSGKTLAFLIPAV 148
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/15 (66%), Positives = 15/15 (100%)
Frame = +2
Query: 539 QTGSGKTLAYILPAI 583
+TGSGKTLA+++PA+
Sbjct: 199 RTGSGKTLAFLIPAV 213
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 615 RGDGPIALVLGATRELAQQI 674
RG P+ LVL TRELA+Q+
Sbjct: 175 RGRNPLCLVLAPTRELARQV 194
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +3
Query: 453 KDNGLQRTDAYSSSRLADSMSGKNLVGVLKRVPAKRWPTSCQPLCT*TT-NRLFRRGDGP 629
K G+++ + L +M G++++G + K + N RG P
Sbjct: 132 KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNP 191
Query: 630 IALVLGATRELAQQI 674
LVL TRELA+Q+
Sbjct: 192 QCLVLAPTRELARQV 206
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Frame = +2
Query: 542 TGSGKTLAYILPAIVHI---NNQPP 607
TGSGKTLA++LP I I N+ PP
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP 86
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Frame = +2
Query: 542 TGSGKTLAYILPAIVHI---NNQPP 607
TGSGKTLA++LP I I N+ PP
Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPP 87
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 33 SKRIHSLNKHLQLNPKI 83
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 542 TGSGKTLAYILPAIVHINNQP 604
TGSGKTL+Y LP + + ++P
Sbjct: 71 TGSGKTLSYALPIVQLLASRP 91
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 33 SKRIHSLNKHLQLNPKI 83
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +2
Query: 539 QTGSGKTLAYILPAIVHINNQ 601
+TGSGKTLA+++P + ++ +
Sbjct: 116 RTGSGKTLAFVIPILEKLHRE 136
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 515 WKEFSWRTQTGSGKTLAYILPAI 583
+K+ + TGSGKTLA+++P +
Sbjct: 53 YKDVAVDAATGSGKTLAFVVPLV 75
>At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 492
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -2
Query: 471 FVTHCLYTLLHIIRKICFFKVLNXIMNLNAHLQLPRDYFCTLR 343
F + LLH+ ICFF V+ MN L L R+ + T R
Sbjct: 214 FYLELIRDLLHLSMYICFFFVI--FMNYGVPLHLLRELYETFR 254
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 382 GVEVHNXIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 504
G V + F P + ++T GY PTPIQ Q P
Sbjct: 102 GSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 27.5 bits (58), Expect = 8.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 169 ETNYRRICCLLQIWNHRFHGYY 104
E + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 403 IQYFEEANFPDYVQQGVKTMGYKEPTPIQ 489
I+ F++ D V +GV GYK+P+ IQ
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQ 49
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,189,468
Number of Sequences: 28952
Number of extensions: 286897
Number of successful extensions: 780
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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