Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060671.seq
         (688 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY137766-1|AAM94344.1|   78|Anopheles gambiae heat shock protein...    51   4e-08
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            24   3.9  
AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein p...    24   5.2  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    23   9.0  
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    23   9.0  

>AY137766-1|AAM94344.1|   78|Anopheles gambiae heat shock protein 70
           protein.
          Length = 78

 Score = 50.8 bits (116), Expect = 4e-08
 Identities = 30/54 (55%), Positives = 33/54 (61%)
 Frame = +3

Query: 510 PAYFNDSQRQATKDAGTIFRLERFFRIHQ*THCCCDCXRSLTKKVLGERNVLIF 671
           PAYFNDSQRQATKDAG I  L     I++ T         L K + GERNVLIF
Sbjct: 7   PAYFNDSQRQATKDAGAIAGLNVMRIINEPT--AAALAYGLDKNLKGERNVLIF 58


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 73   NGKSTRSRNRSGYHVLLRWCLPAREGGDHR--QRPG 174
            +GK  RS +   +++LL    P REG  H+  Q PG
Sbjct: 1802 DGKYKRSYSYEPHNLLLSNLFPPREGFHHKAVQLPG 1837


>AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein
           protein.
          Length = 499

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 187 SVLCCVHRHRASHRRCRQEPGGENPNNTI 273
           SVL C +  R     C   P G N N ++
Sbjct: 10  SVLGCAYTQRTKCAACLDSPDGMNGNESL 38


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +3

Query: 171 RATGPLRLMLRSQTPSVSSEMPPRTRWREPQQHNIRC 281
           +  G L  +  S + +VSS++PP       +  ++ C
Sbjct: 744 KVAGTLGAVQPSSSEAVSSKLPPTAEPEHSESSDVEC 780


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +3

Query: 96  ESIWVPRTLALVSSSTGRWRSSPT-TRATGPLRLMLRSQTPSVSSEMPPRTRWREPQQHN 272
           E++W   + A   S T  W+      RAT  L L+   Q P +      +  W   Q+H+
Sbjct: 30  ENLWKFESTAAPESLTETWKEGDAKARATIAL-LVDDCQHPLIRDCKTAKGTWDALQKHH 88

Query: 273 IRCQTSHRT*VRRCYCASRHE 335
            +   S +  + +  C + ++
Sbjct: 89  QKTTMSTKVSLLKKLCKAEYD 109


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 782,152
Number of Sequences: 2352
Number of extensions: 17153
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69413730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)