Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060670.seq
         (684 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003793-1|AAO41476.1| 1000|Drosophila melanogaster GH07384p pro...   131   1e-30
AE014297-129|AAF52107.1| 1105|Drosophila melanogaster CG1059-PA ...   131   1e-30
U57758-1|AAB49932.1|  360|Drosophila melanogaster putative thyro...    30   3.4  
AY071174-1|AAL48796.1|  195|Drosophila melanogaster RE22911p pro...    30   3.4  
AY069836-1|AAL39981.1|  444|Drosophila melanogaster SD08021p pro...    30   3.4  
AF129079-1|AAD28604.1|  444|Drosophila melanogaster COP9 signalo...    30   3.4  
AE014297-1902|AAX52952.1| 1357|Drosophila melanogaster CG33555-P...    30   3.4  
AE014297-892|AAF54348.1|  195|Drosophila melanogaster CG9740-PA ...    30   3.4  
AE014134-1594|AAF52736.1|  444|Drosophila melanogaster CG9556-PB...    30   3.4  
AE014134-1593|AAN10685.1|  444|Drosophila melanogaster CG9556-PA...    30   3.4  

>BT003793-1|AAO41476.1| 1000|Drosophila melanogaster GH07384p
           protein.
          Length = 1000

 Score =  131 bits (316), Expect = 1e-30
 Identities = 60/128 (46%), Positives = 91/128 (71%), Gaps = 2/128 (1%)
 Frame = +3

Query: 258 LREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIK 437
           L +Q+LL +Q +++  LRRK+C+VV+E+ARN ID+D NNQWP+ LQF+F CA++  P ++
Sbjct: 86  LLQQILLAVQQEVTPQLRRKICEVVAEVARNLIDEDCNNQWPDILQFLFQCANSPTPQLQ 145

Query: 438 EAGIRMFTSVPGVFGNRQTENLDV*KAC*YLALQPNESMALRTQAVKAVGAFILLHD--* 611
           E+ +R+F+SVP +FGN++ + +D+ K     ++       +R QAV+AVGAFIL HD   
Sbjct: 146 ESALRIFSSVPSIFGNQEAQYIDLIKQMLAKSMDAGSDPEVRVQAVRAVGAFILYHDKEN 205

Query: 612 EPIIPKHF 635
           E  I KHF
Sbjct: 206 ETAIHKHF 213



 Score = 89.0 bits (211), Expect = 5e-18
 Identities = 42/65 (64%), Positives = 51/65 (78%)
 Frame = +1

Query: 13  DQAQFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAAVLL 192
           DQA F QLL +LLSTDND+R QAE+AYNN+  E KV HL+ +IQN   +E+ RQ AAVLL
Sbjct: 4   DQAHFQQLLASLLSTDNDVRQQAEEAYNNLSRELKVTHLLGNIQNGQQSEEARQMAAVLL 63

Query: 193 RRLFS 207
           RRLF+
Sbjct: 64  RRLFT 68


>AE014297-129|AAF52107.1| 1105|Drosophila melanogaster CG1059-PA
           protein.
          Length = 1105

 Score =  131 bits (316), Expect = 1e-30
 Identities = 60/128 (46%), Positives = 91/128 (71%), Gaps = 2/128 (1%)
 Frame = +3

Query: 258 LREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIK 437
           L +Q+LL +Q +++  LRRK+C+VV+E+ARN ID+D NNQWP+ LQF+F CA++  P ++
Sbjct: 86  LLQQILLAVQQEVTPQLRRKICEVVAEVARNLIDEDCNNQWPDILQFLFQCANSPTPQLQ 145

Query: 438 EAGIRMFTSVPGVFGNRQTENLDV*KAC*YLALQPNESMALRTQAVKAVGAFILLHD--* 611
           E+ +R+F+SVP +FGN++ + +D+ K     ++       +R QAV+AVGAFIL HD   
Sbjct: 146 ESALRIFSSVPSIFGNQEAQYIDLIKQMLAKSMDAGSDPEVRVQAVRAVGAFILYHDKEN 205

Query: 612 EPIIPKHF 635
           E  I KHF
Sbjct: 206 ETAIHKHF 213



 Score = 89.0 bits (211), Expect = 5e-18
 Identities = 42/65 (64%), Positives = 51/65 (78%)
 Frame = +1

Query: 13  DQAQFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAAVLL 192
           DQA F QLL +LLSTDND+R QAE+AYNN+  E KV HL+ +IQN   +E+ RQ AAVLL
Sbjct: 4   DQAHFQQLLASLLSTDNDVRQQAEEAYNNLSRELKVTHLLGNIQNGQQSEEARQMAAVLL 63

Query: 193 RRLFS 207
           RRLF+
Sbjct: 64  RRLFT 68


>U57758-1|AAB49932.1|  360|Drosophila melanogaster putative thyroid
           receptor interactingprotein protein.
          Length = 360

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 22  QFYQLLNTLLSTD-NDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAE 162
           ++  L N L+ +  N   SQ    Y N P    + +LVNS QN DI E
Sbjct: 279 KYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVNSYQNNDINE 326


>AY071174-1|AAL48796.1|  195|Drosophila melanogaster RE22911p
           protein.
          Length = 195

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 114 KSSAPSEFNSKCRHCRRCASN 176
           K   P ++ + C HCR+C SN
Sbjct: 32  KDGEPKKYRALCTHCRKCQSN 52


>AY069836-1|AAL39981.1|  444|Drosophila melanogaster SD08021p
           protein.
          Length = 444

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 22  QFYQLLNTLLSTD-NDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAE 162
           ++  L N L+ +  N   SQ    Y N P    + +LVNS QN DI E
Sbjct: 279 KYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVNSYQNNDINE 326


>AF129079-1|AAD28604.1|  444|Drosophila melanogaster COP9
           signalosome subunit 2 CSN2 protein.
          Length = 444

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 22  QFYQLLNTLLSTD-NDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAE 162
           ++  L N L+ +  N   SQ    Y N P    + +LVNS QN DI E
Sbjct: 279 KYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVNSYQNNDINE 326


>AE014297-1902|AAX52952.1| 1357|Drosophila melanogaster CG33555-PA,
           isoform A protein.
          Length = 1357

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 87  RIQQHSNRNK-SSAPSEFNSKCRHCRRCASNGGRAVTKII*CRI 215
           +++QH+N N  +S PS      RHC RC +  GR   +   CR+
Sbjct: 10  QLEQHNNHNAHTSDPS------RHCARCTTELGRITNRGAPCRV 47


>AE014297-892|AAF54348.1|  195|Drosophila melanogaster CG9740-PA
           protein.
          Length = 195

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 114 KSSAPSEFNSKCRHCRRCASN 176
           K   P ++ + C HCR+C SN
Sbjct: 32  KDGEPKKYRALCTHCRKCQSN 52


>AE014134-1594|AAF52736.1|  444|Drosophila melanogaster CG9556-PB,
           isoform B protein.
          Length = 444

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 22  QFYQLLNTLLSTD-NDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAE 162
           ++  L N L+ +  N   SQ    Y N P    + +LVNS QN DI E
Sbjct: 279 KYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVNSYQNNDINE 326


>AE014134-1593|AAN10685.1|  444|Drosophila melanogaster CG9556-PA,
           isoform A protein.
          Length = 444

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 22  QFYQLLNTLLSTD-NDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAE 162
           ++  L N L+ +  N   SQ    Y N P    + +LVNS QN DI E
Sbjct: 279 KYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVNSYQNNDINE 326


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,236,914
Number of Sequences: 53049
Number of extensions: 624443
Number of successful extensions: 1393
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1390
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)