Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060670.seq
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta...    52   4e-07
AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical ...    30   1.3  
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr...    28   5.4  

>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
           family protein 3 protein.
          Length = 1092

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 30/103 (29%), Positives = 50/103 (48%)
 Frame = +3

Query: 306 LRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEAGIRMFTSVPGVFGN 485
           +++K+ D++SE+A N IDD G+  W   L+ M  C  ++D       + +    P +FGN
Sbjct: 100 IKKKIADLISEIASNLIDDSGDMTWGGVLELMDHCLKSEDLTGNYIALLILRGCPIIFGN 159

Query: 486 RQTENLDV*KAC*YLALQPNESMALRTQAVKAVGAFILLHD*E 614
           R    L   K            + ++  AV+AV AF + +D E
Sbjct: 160 RLAHFLPTLKVV-LEKCMATPDLQIKATAVRAVIAFAVDNDEE 201



 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 27/65 (41%), Positives = 34/65 (52%)
 Frame = +1

Query: 13  DQAQFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAAVLL 192
           D  QF +L+  L S DNDIR QAE+ Y  I   TKV  L  +  +     D R T  V L
Sbjct: 2   DVNQFTELITKLQSADNDIRKQAEEVYEKIEGPTKVAALFEAYTHHTNNSDARSTVLVFL 61

Query: 193 RRLFS 207
           RR+ +
Sbjct: 62  RRVLA 66


>AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical
            protein Y54E2A.6 protein.
          Length = 1798

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 427  QTSKKLVLE-CLRLYQVYLEIVRLKTWMYKRHVNIWLCSQM 546
            +T  K VL+ C+R+ Q   E+ RLK W+    +NI L  QM
Sbjct: 1546 RTDLKSVLDQCIRILQAMREMARLKNWL-SATMNIILLQQM 1585


>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical protein
            D2045.2 protein.
          Length = 1792

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/73 (24%), Positives = 34/73 (46%)
 Frame = +3

Query: 249  ADVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDP 428
            A+ + ++LL  L  D    +R   C  +S+L R H   + +   PE+L+ +         
Sbjct: 1116 ANEIAKELLPALT-DREYRVRESACLALSDLLRGHDTVEMHKMIPEYLEAILRVRDDVKE 1174

Query: 429  NIKEAGIRMFTSV 467
            +++EA  R   S+
Sbjct: 1175 SVREAADRAADSI 1187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,581,558
Number of Sequences: 27780
Number of extensions: 322515
Number of successful extensions: 908
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)