Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060669.seq
         (690 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    25   0.77 
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    22   5.4  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    21   7.2  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   7.2  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 488 NSLTQYCFGLYTHTRHTVNNH 426
           N  T++     THTRHT  +H
Sbjct: 267 NRFTRHLIQRRTHTRHTTTSH 287


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/51 (19%), Positives = 27/51 (52%)
 Frame = -2

Query: 335 FLTLFTLVRVCDEY*IFLFKLEEHRDGVDLMVMQRSCSSLRVSVKRVSPAL 183
           F  L+ L+ +C+    F  + +   + + + +  ++C+S  + V+++S  L
Sbjct: 175 FCYLWVLILICNIALAFKQRYQLINEQMAVRINPKNCASFVIEVRKLSRLL 225


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 546 SNLKLKNYTRRFQRIVENVNVIIATYNDDGGPMG 647
           ++L   N  +R+ + V++  V+ AT+   G P G
Sbjct: 98  ASLLFLNLAKRWPKFVKDWCVVDATFASYGWPKG 131


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 546 SNLKLKNYTRRFQRIVENVNVIIATYNDDGGPMG 647
           ++L   N  +R+ + V++  V+ AT+   G P G
Sbjct: 98  ASLLFLNLAKRWPKFVKDWCVVDATFASYGWPKG 131


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,307
Number of Sequences: 336
Number of extensions: 3417
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)