Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060669.seq
(690 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 117 1e-27
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 117 1e-27
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 81 1e-16
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 55 1e-08
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 49 7e-07
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 46 5e-06
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 44 2e-05
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 36 0.006
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 34 0.022
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 34 0.022
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 34 0.022
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 30 0.36
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 27 1.9
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 1.9
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 26 4.5
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 4.5
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 26 5.9
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 25 7.8
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.8
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch... 25 7.8
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 7.8
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 25 7.8
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 117 bits (282), Expect = 1e-27
Identities = 68/145 (46%), Positives = 89/145 (61%), Gaps = 1/145 (0%)
Frame = +3
Query: 255 AISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEVTAALRVTDGALXX 431
AIS+F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEVTAALRVTDGAL
Sbjct: 74 AISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVV 128
Query: 432 XXXXXXXXXQTETVLRQAIAERIKPICS*TKWTVLFLSSNLKLKNYTRRFQRIVENVNVI 611
QTETVLRQA+ ERI+P+ K L + + + F R+VE+VNV+
Sbjct: 129 VDTIEGVCVQTETVLRQALGERIRPVVVVNKVDRALLELQISQEELYQNFARVVESVNVV 188
Query: 612 IATYNDDGGPMGECVSTLAKGSVGF 686
I+TY D +G+C KG+V F
Sbjct: 189 ISTYYDK--VLGDCQVFPDKGTVAF 211
Score = 109 bits (262), Expect = 4e-25
Identities = 51/72 (70%), Positives = 60/72 (83%)
Frame = +1
Query: 40 VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 219
V FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR
Sbjct: 2 VAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRA 61
Query: 220 DEQDRCITIKST 255
DEQ+R +TIKST
Sbjct: 62 DEQERGVTIKST 73
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 117 bits (282), Expect = 1e-27
Identities = 68/145 (46%), Positives = 89/145 (61%), Gaps = 1/145 (0%)
Frame = +3
Query: 255 AISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEVTAALRVTDGALXX 431
AIS+F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEVTAALRVTDGAL
Sbjct: 74 AISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVV 128
Query: 432 XXXXXXXXXQTETVLRQAIAERIKPICS*TKWTVLFLSSNLKLKNYTRRFQRIVENVNVI 611
QTETVLRQA+ ERI+P+ K L + + + F R+VE+VNV+
Sbjct: 129 VDTIEGVCVQTETVLRQALGERIRPVVVVNKVDRALLELQISQEELYQNFARVVESVNVV 188
Query: 612 IATYNDDGGPMGECVSTLAKGSVGF 686
I+TY D +G+C KG+V F
Sbjct: 189 ISTYYDK--VLGDCQVFPDKGTVAF 211
Score = 109 bits (262), Expect = 4e-25
Identities = 51/72 (70%), Positives = 60/72 (83%)
Frame = +1
Query: 40 VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 219
V FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR
Sbjct: 2 VAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRA 61
Query: 220 DEQDRCITIKST 255
DEQ+R +TIKST
Sbjct: 62 DEQERGVTIKST 73
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 81.4 bits (192), Expect = 1e-16
Identities = 53/123 (43%), Positives = 68/123 (55%)
Frame = +3
Query: 255 AISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXX 434
AIS+FF++ I+ D++ + EK +LINLIDSPGHVDFSSEV++A R+ DGA
Sbjct: 74 AISLFFKV-------ISQNDEK-RVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLV 125
Query: 435 XXXXXXXXQTETVLRQAIAERIKPICS*TKWTVLFLSSNLKLKNYTRRFQRIVENVNVII 614
QT TVLRQA +RIK I K L L R+VE VN +I
Sbjct: 126 DAVEGVCSQTITVLRQAWIDRIKVILVINKMDRLITELKLSPIEAHYHLLRLVEQVNAVI 185
Query: 615 ATY 623
T+
Sbjct: 186 GTF 188
Score = 70.1 bits (164), Expect = 3e-13
Identities = 32/67 (47%), Positives = 47/67 (70%)
Frame = +1
Query: 55 DEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDR 234
+++ + + NIRN +++AHVDHGK+TL DSL++ GII+ AG RF D R+DE R
Sbjct: 7 EKLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITR 66
Query: 235 CITIKST 255
IT+KS+
Sbjct: 67 GITMKSS 73
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 54.8 bits (126), Expect = 1e-08
Identities = 28/59 (47%), Positives = 35/59 (59%)
Frame = +3
Query: 306 NPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQ 482
N Q+ EK + IN+ID+PGH+DF+ EV ALRV DGA+ QT TV RQ
Sbjct: 134 NEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQ 192
Score = 36.7 bits (81), Expect = 0.003
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Frame = +1
Query: 43 NFTVDEIRGMMDKKR--NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAR--AGETRF-- 204
N + E DKKR IRN+ + AH+D GK+T T+ ++ G I G+
Sbjct: 41 NLNIQEQLNDNDKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGA 100
Query: 205 -TDTRKDEQDRCITIKSTPSLCS 270
D + E+++ ITI+S + C+
Sbjct: 101 KMDFMELEREKGITIQSAATHCT 123
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 48.8 bits (111), Expect = 7e-07
Identities = 25/64 (39%), Positives = 40/64 (62%)
Frame = +1
Query: 61 IRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCI 240
+RG+ + +RN +VIAH+DHGKSTL+D ++ G+I +F D + E+ R I
Sbjct: 50 VRGIPQNR--VRNWAVIAHIDHGKSTLSDCILKLTGVI-NEHNFRNQFLDKLEVERRRGI 106
Query: 241 TIKS 252
T+K+
Sbjct: 107 TVKA 110
Score = 39.5 bits (88), Expect = 4e-04
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3
Query: 333 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERI 500
+ +L+NLID+PGHVDF +EV +L +G + QT + A ++ +
Sbjct: 122 QSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQGIQAQTLSNFYMAFSQNL 177
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 46.0 bits (104), Expect = 5e-06
Identities = 26/100 (26%), Positives = 43/100 (43%)
Frame = +3
Query: 333 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPIC 512
K F ID+PGHVDF EV A + ++DG + T +++ AI + +
Sbjct: 207 KTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVVDVIEGVMINTTRIIKHAILHDMPIVL 266
Query: 513 S*TKWTVLFLSSNLKLKNYTRRFQRIVENVNVIIATYNDD 632
K L L L + + + +++ VN I + D
Sbjct: 267 VLNKVDRLILELRLPPNDAYHKLRHVIDEVNDNICQISKD 306
Score = 43.2 bits (97), Expect = 4e-05
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +1
Query: 67 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCIT 243
G++ ++R+ V H+ HGKS L D LV + R+TDT E++R ++
Sbjct: 132 GLLTGTDDVRSFIVAGHLHHGKSALLDLLVYYTHPDTKPPKRRSLRYTDTHYLERERVMS 191
Query: 244 IKSTP-SLCSSSLKRK 288
IKSTP +L S +K K
Sbjct: 192 IKSTPLTLAVSDMKGK 207
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 44.0 bits (99), Expect = 2e-05
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = +3
Query: 345 INLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPI 509
INLID+PGH DF+ EV ++ V DGA+ QT+ V +QA I +
Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAGVEAQTKVVWKQATKRGIPKV 149
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = +1
Query: 88 NIRNMSVIAHVDHGKSTLTDSLVSKAGI---IAGARAGETRFTDTRKDEQDRCITIKS 252
+IRN+ +IAH+D GK+TLT+ ++ G G+T D E+ R ITI S
Sbjct: 27 SIRNVGIIAHIDAGKTTLTEKMLYYGGFTSHFGNVDTGDT-VMDYLPAERQRGITINS 83
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 35.9 bits (79), Expect = 0.006
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +1
Query: 79 KKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 252
KK ++ N+ I HVDHGK+TLT ++ + A + D +E+ R ITI S
Sbjct: 50 KKPHV-NIGTIGHVDHGKTTLTAAITKCLSDLGQASFMDYSQIDKAPEEKARGITISS 106
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/52 (26%), Positives = 19/52 (36%)
Frame = +3
Query: 354 IDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPI 509
+D PGH D+ + DGA+ QT L A +K I
Sbjct: 121 VDCPGHADYIKNMITGAATMDGAIIVVSATDGQMPQTREHLLLARQVGVKQI 172
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.022
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 73 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 168
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.022
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 73 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 168
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.022
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 73 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 168
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 29.9 bits (64), Expect = 0.36
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +1
Query: 100 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR----FTDTRKDEQDRCITIKSTPSLC 267
++++ HVDHGK+TL D+ K+ I + G T+ FT D+ + IT TP
Sbjct: 174 VTLMGHVDHGKTTLLDAF-RKSTIASTEHGGITQKIGAFT-VPFDKGSKFITFLDTPGHM 231
Query: 268 SSSLKRK 288
+ RK
Sbjct: 232 AFEAMRK 238
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -2
Query: 611 NDVNIFYNTLETSGIV-LQLQVGAQEEHGPFCS*TDRLDA-LGNSLTQYCFGLYTHTR 444
ND++I Y+ + TSG Q+ + + HG C R D+ L + + ++ FG + R
Sbjct: 1090 NDLDILYDAMPTSGYSNFQIPMHVRSVHGWSCQWGPREDSMLLSGICKHGFGAWLEIR 1147
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.5 bits (58), Expect = 1.9
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = -3
Query: 475 STVSVCTHTPDTQSTT-TRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVM 299
+T S + +P + STT T +PS + S++ +S S+ S S S S
Sbjct: 135 TTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 194
Query: 298 NTKSFSSSSKN 266
++ S SSSS +
Sbjct: 195 SSSSSSSSSSS 205
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = -3
Query: 478 RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVM 299
++TVS + + T S+++ +PS + + TS S+ S S S S
Sbjct: 124 QTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSS 183
Query: 298 NTKSFSSSSKN 266
++ S SSSS +
Sbjct: 184 SSSSSSSSSSS 194
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = -1
Query: 126 VIDVGDHRHVADIPLLVHHPTD-----LVYREIHTLSTTSLENVLVP 1
VID+ H A++ LL H TD L+ ++ S+T+L +++ P
Sbjct: 126 VIDIAHEVHYANVRLLAHAKTDAGEPVLIPVKLKKHSSTNLRSIIRP 172
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 97 NMSVIAHVDHGKSTLTDSLVSKAGII 174
N+ I HVD GKSTL +++ G++
Sbjct: 240 NIVFIGHVDAGKSTLGGNILFLTGMV 265
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 540 LSSNLKLKNYTRRFQRIVENVNVIIATYNDDGGPMGECVSTLAK 671
L+ NL KN+++ + + V AT ND GP G ++ +A+
Sbjct: 6 LAYNLLAKNFSKGYTDT--QIKVRNATTNDSWGPSGTAMAEIAE 47
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 7.8
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = -1
Query: 246 NGDATVLFVLTRVSETGLSGSRTSNDTGLGNQRVREG*LAVIDVGDHRHVADI-PLLVHH 70
N +A VL V+ S+ S + L + + G L +D D + V+ I L+V
Sbjct: 167 NDEAVVLRVIDPSSKLAEDLSDEQSYRSLA-EHIMAGILKKVD--DDKAVSIIVELVVGK 223
Query: 69 PTDLVYREIHTLSTTSL 19
P D++ R IH S SL
Sbjct: 224 PQDMILRTIHVYSPDSL 240
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 7.8
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = -3
Query: 475 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 296
S+ S T TP + STT+ + S + S ++S S+ + + S S S +
Sbjct: 140 SSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSS-SASSSGSISSAD 198
Query: 295 TKSFSSSSKN 266
K+ S+SS +
Sbjct: 199 AKTVSASSNS 208
>SPBC19F8.06c |meu22||amino acid permease, unknown
11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 258 WRRFNGDATVLFVLTRVSETGLSGSRTSNDTGL 160
WR F LF+LT V + L G RTS+++ +
Sbjct: 293 WRIFLFYIVALFMLTLVVPSDLPGLRTSDNSNV 325
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 122 ITASQPSRTRWFPR-PVSLLVREPERPVSLTRVRTNK 229
+T S T + P P S + REP P+S R+R+++
Sbjct: 48 LTPEPSSNTFYAPSSPASAVRREPLSPMSFVRMRSHR 84
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/82 (19%), Positives = 38/82 (46%)
Frame = +1
Query: 91 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTPSLCS 270
+++ I+H++ KS+ + V+ I + + G F+D ++ PS S
Sbjct: 112 VKSPKAISHLEEKKSSPKEKKVNPFAITSESSRGLNPFSDATSANNPFSLSTDVNPSKPS 171
Query: 271 SSLKRKI*YSSQTLTSVKRVRK 336
S++ K ++++ S+ +K
Sbjct: 172 SNVFSKPSFAAKAQQSITDQQK 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,848,457
Number of Sequences: 5004
Number of extensions: 56680
Number of successful extensions: 221
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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