Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060669.seq
(690 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 154 6e-38
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 4e-06
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10) 39 0.004
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 33 0.29
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 31 0.67
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 31 0.67
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72) 29 4.7
SB_23513| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_50728| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 28 8.2
SB_35209| Best HMM Match : Ank (HMM E-Value=0) 28 8.2
SB_32577| Best HMM Match : PH (HMM E-Value=7e-17) 28 8.2
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 154 bits (374), Expect = 6e-38
Identities = 82/145 (56%), Positives = 98/145 (67%)
Frame = +3
Query: 255 AISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXX 434
AIS+++EL E D +IT P ++ E+GFLINLIDSPGHVDFSSEVTAALRVTDGAL
Sbjct: 73 AISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGALVVV 130
Query: 435 XXXXXXXXQTETVLRQAIAERIKPICS*TKWTVLFLSSNLKLKNYTRRFQRIVENVNVII 614
QTETVLRQAIAERIKP+ K L L ++ + F RIVE++NVII
Sbjct: 131 DCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDQEDLYQTFARIVESINVII 190
Query: 615 ATYNDDGGPMGECVSTLAKGSVGFG 689
ATY+D+ GPMG KG+V FG
Sbjct: 191 ATYSDEDGPMGNIQVGPEKGTVAFG 215
Score = 139 bits (336), Expect = 2e-33
Identities = 66/72 (91%), Positives = 69/72 (95%)
Frame = +1
Query: 40 VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 219
VNFT D+IRG+MDKK NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA A+AGETRFTDTRK
Sbjct: 1 VNFTTDQIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRK 60
Query: 220 DEQDRCITIKST 255
DEQDRCITIKST
Sbjct: 61 DEQDRCITIKST 72
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/54 (42%), Positives = 36/54 (66%)
Frame = +1
Query: 91 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 252
+RN S++AHVDHGKSTL D L+ G I+ + + + D + E++R IT+K+
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLLEVTGTISKS-SDNKQVLDKLQVERERGITVKA 1993
>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
Length = 563
Score = 38.7 bits (86), Expect = 0.004
Identities = 26/78 (33%), Positives = 33/78 (42%)
Frame = +3
Query: 387 EVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPICS*TKWTVLFLSSNLKLKN 566
+V+ A+R+ DGAL QT VLRQA E I+P K L
Sbjct: 93 QVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCLVLNKIDRLITELKYSPSE 152
Query: 567 YTRRFQRIVENVNVIIAT 620
Q+I+E VN I T
Sbjct: 153 AFIHLQQILEQVNAITGT 170
Score = 34.3 bits (75), Expect = 0.094
Identities = 23/78 (29%), Positives = 33/78 (42%)
Frame = +3
Query: 381 SSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPICS*TKWTVLFLSSNLKL 560
+ +V+ A+R+ DGAL QT VLRQA E I+P K L
Sbjct: 21 AGKVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCLVLNKIDRLITELKYSP 80
Query: 561 KNYTRRFQRIVENVNVII 614
Q+I+E V+ +
Sbjct: 81 SEAFIHLQQILEQVSTAV 98
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 100 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 201
++++ HVDHGK+TL D+L + + AG G T+
Sbjct: 31 VTIMGHVDHGKTTLLDAL-RNSSVAAGEAGGITQ 63
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/67 (28%), Positives = 27/67 (40%)
Frame = +3
Query: 324 KSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIK 503
K G I ID+PGH F+S VTD + QT +R A+ ++
Sbjct: 71 KLPSGEKITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQTVESIRHAMHAKVP 130
Query: 504 PICS*TK 524
I + K
Sbjct: 131 LIVAINK 137
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 32.7 bits (71), Expect = 0.29
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 73 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 168
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 31.9 bits (69), Expect = 0.50
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +1
Query: 43 NFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 219
N+ ++ + +MD IRN+++ H+ GK+ D L + A+ G+ +T +
Sbjct: 114 NYNIEYLADLMDNPELIRNVALAGHLHSGKTAFLDCLFEQTHPELEAKEGKEVMLNTER 172
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 31.5 bits (68), Expect = 0.67
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 100 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 201
++V+ HVDHGK++L D + A +I G G T+
Sbjct: 94 VTVMGHVDHGKTSLLD-YIRNANVIEGESGGITQ 126
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 31.5 bits (68), Expect = 0.67
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 345 INLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVL 476
IN++D+PGH DF+ + L D + QTE ++
Sbjct: 81 INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKGVEEQTEKLV 124
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 76 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA 189
D+ + R +I+H D GK+TLT+ L+ G I A A
Sbjct: 5 DEIKRRRTFGIISHPDAGKTTLTEKLLLFGGAIQEAGA 42
>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1864
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = -3
Query: 457 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKL---IKKPFSLFSRWSGFVMNTKS 287
TH+P + TTT AP+ E C G+ ++L K +L R+ G
Sbjct: 612 THSPSSTPTTTGAPTTAGFNEFNLEASEDCTGDYVELRDGDSKSAALIGRYCGTNAPMML 671
Query: 286 FSSSSK 269
SS K
Sbjct: 672 MGSSDK 677
>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
Length = 300
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 418 PSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 296
P R A TCPGE ++L+ + +RWS V+N
Sbjct: 242 PPPERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281
>SB_23513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 28.7 bits (61), Expect = 4.7
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +1
Query: 31 AQSVNFTVDEIRGMMDKKRNIRNMSVIAHVDHG--KSTLTDSLVSKAGIIAGARAGETRF 204
AQ VD G++ + +A +D K+ + D+LV GI+ R G +
Sbjct: 147 AQHDGVAVDWATGLLYWTNRDKKAIEVAKLDGSFRKTLIKDNLVGPKGIVVDPRTGLMFW 206
Query: 205 TDTRKDEQDRC-ITIKSTPSLCSSSLKR 285
TD + +R + + SL +++LKR
Sbjct: 207 TDKETPKIERATLAGRDRISLVTTALKR 234
>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3292
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -3
Query: 475 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKP 335
ST+ T + STTT A ++ TS + E+ + IKKP
Sbjct: 2817 STIGTSRPTSEAFSTTTAATGTIPDSSATSATEGLSDAETEEFIKKP 2863
>SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -3
Query: 457 THTPDTQSTTTRAPSVTRSAAVTSEEKST 371
T TP+TQSTTT P T+S T E +ST
Sbjct: 346 TETPETQSTTT-TPE-TQSTTTTPETQST 372
>SB_50728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 83
Score = 28.3 bits (60), Expect = 6.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +2
Query: 419 SPCGC*LCVWCVCTNR 466
SPC C+WC C+ R
Sbjct: 18 SPCALYFCIWCECSKR 33
>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 1354
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3
Query: 688 PKPTEPFARVDTHSPMGPPSSLYVAIMT 605
P P P AR TH P SSL +MT
Sbjct: 516 PLPPSPVARRHTHGDESPTSSLVPEVMT 543
>SB_35209| Best HMM Match : Ank (HMM E-Value=0)
Length = 787
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 214 RKDEQDRCITIKSTPSLCSSSL 279
R +EQD C + +T +LCSSSL
Sbjct: 733 RSNEQDFCGIVYNTTNLCSSSL 754
>SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)
Length = 1248
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3
Query: 688 PKPTEPFARVDTHSPMGPPSSLYVAIMT 605
P P P AR TH P SSL +MT
Sbjct: 295 PLPPSPVARRHTHGDESPTSSLVPEVMT 322
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,225,817
Number of Sequences: 59808
Number of extensions: 459505
Number of successful extensions: 1570
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1557
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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