Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060669.seq
         (690 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    29   0.14 
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    26   0.97 
AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical prot...    26   0.97 
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            24   5.2  
AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein ...    24   5.2  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    23   6.9  
AF046924-1|AAC08530.1|  122|Anopheles gambiae mucin protein.           23   6.9  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           23   9.1  

>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 29.1 bits (62), Expect = 0.14
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +3

Query: 72  DGQEAEYPQHVCDRPRRSRQVNPHGLVGFQGRYHCWCESRR 194
           D   A   QH+  RP+RS + NP       GR H  C+SRR
Sbjct: 273 DENPAGAQQHLSHRPQRSTRKNP------AGRQHDRCDSRR 307


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 26.2 bits (55), Expect = 0.97
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 246 NGDATVLFVLTRVSETGLSGSRTSND 169
           +GD T L  +T ++E+G+  S TS D
Sbjct: 194 SGDETDLDAITTLAESGIPSSNTSGD 219


>AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical protein
           protein.
          Length = 765

 Score = 26.2 bits (55), Expect = 0.97
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 246 NGDATVLFVLTRVSETGLSGSRTSND 169
           +GD T L  +T ++E+G+  S TS D
Sbjct: 195 SGDETDLDAITTLAESGIPSSNTSGD 220


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 358 SIKLIKKPFSLFSRWSGFVMNTKSFSSSSKNIEMA 254
           +++L+KKP SL S W       +       N ++A
Sbjct: 156 TVRLLKKPPSLDSEWKSSTSTIQLIEQLDSNKQLA 190


>AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein L8
           protein.
          Length = 261

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 466 SVCTHTPDTQSTTTRAPS 413
           SV  H PDT+ T  + PS
Sbjct: 135 SVIAHNPDTKRTRVKLPS 152


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 87  EYPQHVCDRPRRSRQVNPHGLVGFQG 164
           ++P HVC+R  R+  +N   +V   G
Sbjct: 350 QHPLHVCERFERASVINREEIVRKHG 375


>AF046924-1|AAC08530.1|  122|Anopheles gambiae mucin protein.
          Length = 122

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 475 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKST-CPGES 356
           +TV+  T T    +TTT AP+ T + A      +T  PG++
Sbjct: 34  TTVAPTTTTVAPTTTTTVAPTTTTTVAPGQTTTTTVAPGQT 74


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 460 CTHTPDTQSTTTRAPSVTRSAAVTS 386
           CT++ D+ +TTT   S + S+  T+
Sbjct: 471 CTYSSDSTTTTTTTKSASTSSHSTT 495


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 738,838
Number of Sequences: 2352
Number of extensions: 14199
Number of successful extensions: 58
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69831885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)