Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060669.seq
(690 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 159 1e-39
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 157 9e-39
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 67 1e-11
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 67 1e-11
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 66 2e-11
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 66 2e-11
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 52 5e-07
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 49 4e-06
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 48 6e-06
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 39 0.003
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 39 0.003
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 39 0.003
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 35 0.048
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 35 0.048
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 33 0.25
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 33 0.25
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 33 0.25
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 33 0.25
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 33 0.25
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 33 0.25
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 32 0.34
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 31 1.0
U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical pr... 31 1.0
AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical ... 30 1.8
AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical ... 30 1.8
Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical pr... 29 3.1
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 3.1
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 3.1
Z69792-3|CAA93666.1| 284|Caenorhabditis elegans Hypothetical pr... 29 4.1
U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical pr... 29 4.1
U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z81586-1|CAB04690.1| 579|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 28 7.2
AF040652-7|AAB95017.1| 210|Caenorhabditis elegans Hypothetical ... 28 7.2
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z73098-4|CAD44145.1| 565|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z73098-3|CAD44144.1| 501|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z48055-8|CAA88133.2| 379|Caenorhabditis elegans Hypothetical pr... 27 9.6
U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical pr... 27 9.6
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 27 9.6
AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical ... 27 9.6
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 159 bits (387), Expect = 1e-39
Identities = 91/153 (59%), Positives = 102/153 (66%), Gaps = 8/153 (5%)
Frame = +3
Query: 255 AISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPGHVDFSSEVTAALRV 410
AIS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGHVDFSSEVTAALRV
Sbjct: 74 AISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRV 133
Query: 411 TDGALXXXXXXXXXXXQTETVLRQAIAERIKPICS*TKWTVLFLSSNLKLKNYTRRFQRI 590
TDGAL QTETVLRQAIAERIKP+ K L L + + FQRI
Sbjct: 134 TDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLGAEELFQTFQRI 193
Query: 591 VENVNVIIATYNDDGGPMGECVSTLAKGSVGFG 689
VEN+NVIIATY DD GPMG + + G+VGFG
Sbjct: 194 VENINVIIATYGDDDGPMGPIMVDPSIGNVGFG 226
Score = 142 bits (343), Expect = 3e-34
Identities = 68/83 (81%), Positives = 75/83 (90%)
Frame = +1
Query: 40 VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 219
VNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTRK
Sbjct: 2 VNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRK 61
Query: 220 DEQDRCITIKSTPSLCSSSLKRK 288
DEQ+RCITIKST L++K
Sbjct: 62 DEQERCITIKSTAISLFFELEKK 84
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 157 bits (380), Expect = 9e-39
Identities = 90/153 (58%), Positives = 101/153 (66%), Gaps = 8/153 (5%)
Frame = +3
Query: 255 AISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPGHVDFSSEVTAALRV 410
AIS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGHVDFSSEVTAAL V
Sbjct: 74 AISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGV 133
Query: 411 TDGALXXXXXXXXXXXQTETVLRQAIAERIKPICS*TKWTVLFLSSNLKLKNYTRRFQRI 590
TDGAL QTETVLRQAIAERIKP+ K L L + + FQRI
Sbjct: 134 TDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLGAEELFQTFQRI 193
Query: 591 VENVNVIIATYNDDGGPMGECVSTLAKGSVGFG 689
VEN+NVIIATY DD GPMG + + G+VGFG
Sbjct: 194 VENINVIIATYGDDDGPMGPIMVDPSIGNVGFG 226
Score = 142 bits (343), Expect = 3e-34
Identities = 68/83 (81%), Positives = 75/83 (90%)
Frame = +1
Query: 40 VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 219
VNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTRK
Sbjct: 2 VNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRK 61
Query: 220 DEQDRCITIKSTPSLCSSSLKRK 288
DEQ+RCITIKST L++K
Sbjct: 62 DEQERCITIKSTAISLFFELEKK 84
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 66.9 bits (156), Expect = 1e-11
Identities = 39/117 (33%), Positives = 62/117 (52%)
Frame = +3
Query: 294 VFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETV 473
V I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG + TE
Sbjct: 189 VSIVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEGVMMNTERA 245
Query: 474 LRQAIAERIKPICS*TKWTVLFLSSNLKLKNYTRRFQRIVENVNVIIATYNDDGGPM 644
+R AI ER+ +K L L L + + + I++ VN I++T+ ++ P+
Sbjct: 246 IRHAIQERLAVTLCISKIDRLLLELKLPPADAYFKLRLIIDQVNNILSTFAEEDVPV 302
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 70 MMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKA-GIIAGARAGETRFTDTRKDEQDRCITI 246
+MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R +I
Sbjct: 125 LMDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSI 184
Query: 247 KSTP 258
KS P
Sbjct: 185 KSQP 188
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 66.9 bits (156), Expect = 1e-11
Identities = 39/117 (33%), Positives = 62/117 (52%)
Frame = +3
Query: 294 VFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETV 473
V I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG + TE
Sbjct: 64 VSIVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEGVMMNTERA 120
Query: 474 LRQAIAERIKPICS*TKWTVLFLSSNLKLKNYTRRFQRIVENVNVIIATYNDDGGPM 644
+R AI ER+ +K L L L + + + I++ VN I++T+ ++ P+
Sbjct: 121 IRHAIQERLAVTLCISKIDRLLLELKLPPADAYFKLRLIIDQVNNILSTFAEEDVPV 177
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 73 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKA-GIIAGARAGETRFTDTRKDEQDRCITIK 249
MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R +IK
Sbjct: 1 MDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIK 60
Query: 250 STP 258
S P
Sbjct: 61 SQP 63
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/56 (51%), Positives = 43/56 (76%)
Frame = +1
Query: 88 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKST 255
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSS 74
Score = 58.8 bits (136), Expect = 3e-09
Identities = 36/92 (39%), Positives = 47/92 (51%)
Frame = +3
Query: 342 LINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPICS*T 521
LINLIDSPGHVDFS EVT+AL ++D AL QTE ++RQ I I
Sbjct: 84 LINLIDSPGHVDFSGEVTSALILSDIALLLIDVIEGICSQTEALIRQVIRNGQAMILVIN 143
Query: 522 KWTVLFLSSNLKLKNYTRRFQRIVENVNVIIA 617
K L + + + R++E VN I+
Sbjct: 144 KIDRLRVELKMSSSEAYQHMSRLIEGVNSCIS 175
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/56 (51%), Positives = 43/56 (76%)
Frame = +1
Query: 88 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKST 255
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSS 74
Score = 58.8 bits (136), Expect = 3e-09
Identities = 36/92 (39%), Positives = 47/92 (51%)
Frame = +3
Query: 342 LINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPICS*T 521
LINLIDSPGHVDFS EVT+AL ++D AL QTE ++RQ I I
Sbjct: 84 LINLIDSPGHVDFSGEVTSALILSDIALLLIDVIEGICSQTEALIRQVIRNGQAMILVIN 143
Query: 522 KWTVLFLSSNLKLKNYTRRFQRIVENVNVIIA 617
K L + + + R++E VN I+
Sbjct: 144 KIDRLRVELKMSSSEAYQHMSRLIEGVNSCIS 175
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 51.6 bits (118), Expect = 5e-07
Identities = 28/59 (47%), Positives = 33/59 (55%)
Frame = +3
Query: 336 GFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPIC 512
G IN+ID+PGHVDF+ EV ALRV DGA+ QT TV RQ + IC
Sbjct: 111 GTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCGVGGVQSQTFTVNRQLARYNVPFIC 169
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +1
Query: 91 IRNMSVIAHVDHGKSTLTDSLVSKAGII 174
IRN+ + AH+D GK+T+T+ ++ AG I
Sbjct: 44 IRNIGISAHIDSGKTTVTERILYYAGRI 71
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/54 (42%), Positives = 34/54 (62%)
Frame = +1
Query: 91 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 252
IRN ++AHVDHGKSTL D L+ G + G+ + D + E++R IT+K+
Sbjct: 42 IRNFGIVAHVDHGKSTLADRLLEMCGAVP---PGQKQMLDKLQVERERGITVKA 92
Score = 48.8 bits (111), Expect = 4e-06
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +3
Query: 333 KGFLINLIDSPGHVDFSSEVTAALRVTDGAL 425
+G+L+NLID+PGHVDFS+EV+ +L V DG L
Sbjct: 100 RGYLLNLIDTPGHVDFSAEVSRSLAVCDGIL 130
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 48.0 bits (109), Expect = 6e-06
Identities = 25/51 (49%), Positives = 29/51 (56%)
Frame = +3
Query: 333 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQA 485
KG INLID+PGHVDF EV +RV DG + QT TV RQ+
Sbjct: 88 KGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAGVQPQTLTVWRQS 138
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Frame = +1
Query: 91 IRNMSVIAHVDHGKSTLTDSLVSKAGII--AGARAGETRFTDTRKDEQDRCITIKS 252
+RN+ VIAHVD GK+T+T+ L+ AG I AG TD E++R IT++S
Sbjct: 25 LRNIGVIAHVDAGKTTVTERLLYLAGAIHVAGHVDKGNTVTDFLDIERERGITVQS 80
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +1
Query: 97 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 252
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI +
Sbjct: 51 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINA 102
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +1
Query: 97 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 252
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI +
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINA 103
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +1
Query: 97 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 252
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI +
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINA 103
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 35.1 bits (77), Expect = 0.048
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +1
Query: 97 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTPSLCSSS 276
N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI S
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGYESP 106
Query: 277 LKR 285
L+R
Sbjct: 107 LRR 109
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 35.1 bits (77), Expect = 0.048
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +1
Query: 97 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTPSLCSSS 276
N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI S
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGYESP 106
Query: 277 LKR 285
L+R
Sbjct: 107 LRR 109
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 32.7 bits (71), Expect = 0.25
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +1
Query: 76 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDE--QDRCITIK 249
D +R ++++ HVDHGK+TL D++ + I AG G T+ E + R +T
Sbjct: 151 DLERRPPIVTIMGHVDHGKTTLLDAM-RNSQIAAGEFGGITQHIGAFSVELTKGRRVTFL 209
Query: 250 STP 258
TP
Sbjct: 210 DTP 212
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 73 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 168
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 73 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 168
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 73 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 168
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 73 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 168
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 73 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 168
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 32.3 bits (70), Expect = 0.34
Identities = 18/68 (26%), Positives = 29/68 (42%)
Frame = -3
Query: 493 SAIA*RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRW 314
+AI ++ + T +T STT+ P +T + + +E T S+ P L RW
Sbjct: 691 TAIFAEASTGIITTDEETTSTTSTTPEITSTKEIVTESAITQTSVSVVESSTPRQLPERW 750
Query: 313 SGFVMNTK 290
V K
Sbjct: 751 KAIVNKFK 758
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 475 STVSVCTHTPDTQSTTTRAPSVTRS-AAVTSEEKSTCPGESIKLIKKP 335
+T + T T T +TTT P+ T + A TSE +T P + + KP
Sbjct: 222 TTPTTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKP 269
>U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical
protein F32E10.3 protein.
Length = 876
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3
Query: 475 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKK 338
+T + T + +TTT APS T + VT K P E KL+KK
Sbjct: 764 TTAAPSTKPAEETTTTTEAPSTT-TKPVTVAVKKVSPEEMEKLVKK 808
>AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical
protein C47F8.8 protein.
Length = 347
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 452 HTRHTVNNHKGSISDTECSCYFRREINV 369
H T H G IS T C+ +FRR I +
Sbjct: 15 HNTETTRRHFGIISCTACAAFFRRSIGM 42
>AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical
protein F43E2.3 protein.
Length = 631
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 445 DTQSTTTRAPSVTRSAAVTSEEKSTCPGESIK 350
D+ +T R+P TRS ++TS + C G+ I+
Sbjct: 174 DSANTILRSPYSTRSDSITSVDSGQCSGDQIE 205
>Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical
protein F23H12.5 protein.
Length = 802
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 475 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCP 365
ST + T T T +TTT AP+ T + T+E P
Sbjct: 210 STSTTTTTTTSTTTTTTEAPTTTTTIKTTTESIEPIP 246
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 124 DRRGRSQTCCGYSASCPSSHG 62
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
C.elegans RNA polymeraseII largest subunit (ama-1 IV)
gene, complete cds. ).
Length = 1859
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 124 DRRGRSQTCCGYSASCPSSHG 62
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>Z69792-3|CAA93666.1| 284|Caenorhabditis elegans Hypothetical
protein F40E10.5 protein.
Length = 284
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = -3
Query: 457 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESI---KLIKKPFSLF 323
T T T +TTT AP++ + + T+E+ +T +I + +K FS F
Sbjct: 218 TTTTTTTTTTTEAPTMPEAVSSTTEQSTTTTAAAIIAEETKEKEFSAF 265
>U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical protein
R08E3.1b protein.
Length = 1465
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -3
Query: 475 STVSVCTHTPDTQSTTTRAPSVTRSAAVTS 386
STVSV T T ST+T APS ++S V++
Sbjct: 1044 STVSVITSTTMLPSTSTVAPSTSQSTIVST 1073
>U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical protein
R08E3.1a protein.
Length = 1512
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -3
Query: 475 STVSVCTHTPDTQSTTTRAPSVTRSAAVTS 386
STVSV T T ST+T APS ++S V++
Sbjct: 1044 STVSVITSTTMLPSTSTVAPSTSQSTIVST 1073
>Z81586-1|CAB04690.1| 579|Caenorhabditis elegans Hypothetical
protein T05F1.2 protein.
Length = 579
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = -3
Query: 169 YRPWKPTSP*GLTCRDRRGRSQTCCGYSASCPSSHGSRLP*NSHFE 32
YR WK P GL + GY +S P S S P S+ E
Sbjct: 438 YREWKVLRPDGLQSTRGFQKESLSSGYGSSLPGSGPSTPPSESNIE 483
>Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical
protein ZK265.7 protein.
Length = 370
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 478 RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 371
++T + T T T +TTT P+ + A + +KST
Sbjct: 163 KTTTTTTTSTTSTSTTTTEKPTTATTTARVTPKKST 198
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 475 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 371
+T + + T + +TTT AP+ T S VT+ E +T
Sbjct: 235 TTTTTESPTTEASTTTTEAPTTTTSEEVTTTEITT 269
>AF040652-7|AAB95017.1| 210|Caenorhabditis elegans Hypothetical
protein T05A8.6 protein.
Length = 210
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -3
Query: 475 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKP 335
+T T T T TTT+AP T + A T+ + C S ++ P
Sbjct: 74 TTPGATTVTTTTAPTTTKAPDCTTTTAPTTTKAPDCTTCSQDILTDP 120
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 97 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQD 231
N+ ++ HVD GK+TLT + A A A T R++ D
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD 60
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 97 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQD 231
N+ ++ HVD GK+TLT + A A A T R++ D
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD 60
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 27.5 bits (58), Expect = 9.6
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -3
Query: 448 PDTQSTTT-RAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMNTKSFSSS 275
P Q T+T P V AA ++ + E PFS SR V NT S SSS
Sbjct: 33 PQNQYTSTPHRPEVLNFAAPSATRLAMRRSEQPVTSSTPFSSSSRPMSAVFNTPSLSSS 91
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 85 RNIRNMSVIAHVDHGKSTLTDSLVSKAGII 174
+++ N+ V+ HVD GKSTL L+ ++
Sbjct: 168 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV 197
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 85 RNIRNMSVIAHVDHGKSTLTDSLVSKAGII 174
+++ N+ V+ HVD GKSTL L+ ++
Sbjct: 186 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV 215
>Z73098-4|CAD44145.1| 565|Caenorhabditis elegans Hypothetical
protein T21C9.3b protein.
Length = 565
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 467 FGLYTHTRHTVNNHKGSISDTECS 396
F L +T+ TV+ KG+ SDTEC+
Sbjct: 371 FPLCDYTQCTVDVQKGNYSDTECA 394
>Z73098-3|CAD44144.1| 501|Caenorhabditis elegans Hypothetical
protein T21C9.3a protein.
Length = 501
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 467 FGLYTHTRHTVNNHKGSISDTECS 396
F L +T+ TV+ KG+ SDTEC+
Sbjct: 371 FPLCDYTQCTVDVQKGNYSDTECA 394
>Z48055-8|CAA88133.2| 379|Caenorhabditis elegans Hypothetical
protein T07A5.1 protein.
Length = 379
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +3
Query: 249 IYAISMFFELEEKDLVFITNPDQREKSEKGFLINL 353
I I +FFE EEK V + + D +EK+ K L NL
Sbjct: 20 IILIKIFFE-EEKFDVLVVSLDSKEKTSKECLSNL 53
>U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical
protein C56E6.5 protein.
Length = 595
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +1
Query: 103 SVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTPSLCSSSLK 282
+++ D GK+TL ++L S AG G A +F TR+ C I SS
Sbjct: 51 AIVGVADSGKTTLLEALTSGAGGDIGGIAMLDKFMLTRRRFNKFCSHINYRNQYPSSLSV 110
Query: 283 RKI*Y 297
R + Y
Sbjct: 111 RSLLY 115
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 27.5 bits (58), Expect = 9.6
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -3
Query: 448 PDTQSTTT-RAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMNTKSFSSS 275
P Q T+T P V AA ++ + E PFS SR V NT S SSS
Sbjct: 33 PQNQYTSTPHRPEVLNFAAPSATRLAMRRSEQPVTSSTPFSSSSRPMSAVFNTPSLSSS 91
>AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical
protein Y41C4A.5 protein.
Length = 373
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = -3
Query: 451 TPDTQSTTTRAPSVTRSAAVTSEEKSTCP-GESIKLIKKPFSLFSRWSGFVMNTKSFSSS 275
TPD ++TTT P+ T++ + +E+ + G ++ P S+ S SG N+ + ++S
Sbjct: 157 TPDPKATTTPTPTTTKAQNIIAEDPNGGQLGGGELVVTNPGSVGS-GSGNSGNSSNNNNS 215
Query: 274 SKN 266
S N
Sbjct: 216 SGN 218
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,060,397
Number of Sequences: 27780
Number of extensions: 334885
Number of successful extensions: 1416
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -