Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060669.seq
(690 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 115 3e-26
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 71 6e-13
At5g13650.2 68418.m01585 elongation factor family protein contai... 58 4e-09
At5g13650.1 68418.m01584 elongation factor family protein contai... 58 7e-09
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 56 2e-08
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 56 2e-08
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 55 5e-08
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 54 9e-08
At5g25230.1 68418.m02991 elongation factor Tu family protein tra... 52 5e-07
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 49 3e-06
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 49 3e-06
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 49 3e-06
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 48 6e-06
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 34 0.077
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 32 0.31
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 32 0.31
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 32 0.31
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 32 0.31
At5g39960.1 68418.m04846 GTP-binding family protein contains Pfa... 32 0.41
At1g61180.1 68414.m06894 disease resistance protein (CC-NBS-LRR ... 31 0.54
At1g58220.1 68414.m06612 myb family transcription factor contain... 31 0.54
At1g61300.1 68414.m06909 disease resistance protein (NBS-LRR cla... 31 0.72
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 31 0.95
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 31 0.95
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 30 1.3
At5g17810.1 68418.m02088 homeobox-leucine zipper transcription f... 30 1.7
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 30 1.7
At3g03660.1 68416.m00369 homeobox-leucine zipper transcription f... 29 2.9
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 29 3.8
At1g04220.1 68414.m00412 beta-ketoacyl-CoA synthase, putative St... 28 5.1
At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (AT... 27 8.9
At3g28790.1 68416.m03593 expressed protein 27 8.9
At2g13690.1 68415.m01510 PRLI-interacting factor, putative simil... 27 8.9
At1g12080.2 68414.m01397 expressed protein 27 8.9
At1g12080.1 68414.m01396 expressed protein 27 8.9
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 115 bits (277), Expect = 3e-26
Identities = 66/143 (46%), Positives = 89/143 (62%)
Frame = +3
Query: 258 ISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXX 437
IS+++E+ ++ L T R+ +E +LINLIDSPGHVDFSSEVTAALR+TDGAL
Sbjct: 75 ISLYYEMTDESLKSFTGA--RDGNE--YLINLIDSPGHVDFSSEVTAALRITDGALVVVD 130
Query: 438 XXXXXXXQTETVLRQAIAERIKPICS*TKWTVLFLSSNLKLKNYTRRFQRIVENVNVIIA 617
QTETVLRQA+ ERI+P+ + K FL + + + F R++EN NVI+A
Sbjct: 131 CIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMA 190
Query: 618 TYNDDGGPMGECVSTLAKGSVGF 686
TY D +G+ KG+V F
Sbjct: 191 TYEDP--LLGDVQVYPEKGTVAF 211
Score = 106 bits (255), Expect = 1e-23
Identities = 53/72 (73%), Positives = 58/72 (80%)
Frame = +1
Query: 40 VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 219
V FT DE+R +MD K NIRNMSVIAHVDHGKSTLTDSLV+ AGIIA AG+ R TDTR
Sbjct: 2 VKFTADELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRA 61
Query: 220 DEQDRCITIKST 255
DE +R ITIKST
Sbjct: 62 DEAERGITIKST 73
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 71.3 bits (167), Expect = 6e-13
Identities = 42/101 (41%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Frame = +3
Query: 333 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPIC 512
K + +NLIDSPGH+DF SEV+ A R++DGAL QT VLRQA E++ P
Sbjct: 72 KDYSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQAWIEKLTPCL 131
Query: 513 S*TKWTVLFLSSNLK-LKNYTRRFQRIVENVNVIIATYNDD 632
K L L ++ YTR RIV VN I++ Y +
Sbjct: 132 VLNKIDRLIFELRLSPMEAYTRLI-RIVHEVNGIVSAYKSE 171
Score = 59.3 bits (137), Expect = 2e-09
Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Frame = +1
Query: 85 RNIRNMSVIAHVDHGKSTLTDSLV--SKAGIIAGARAGETRFTDTRKDEQDRCITIKSTP 258
R +RN+ ++AHVDHGK+TL D L+ S G++ AG+ RF D +EQ R IT+KS+
Sbjct: 7 RKVRNICILAHVDHGKTTLADHLIASSGGGVLHPRLAGKLRFMDYLDEEQRRAITMKSS- 65
Query: 259 SLCSSSLKRK 288
S SLK K
Sbjct: 66 ---SISLKYK 72
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 58.4 bits (135), Expect = 4e-09
Identities = 25/68 (36%), Positives = 46/68 (67%)
Frame = +1
Query: 49 TVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQ 228
+V+ + +D++ N+RN++++AHVDHGK+TL DS++ +A + + + R D+ E+
Sbjct: 69 SVEVKKKQLDRRDNVRNIAIVAHVDHGKTTLVDSMLRQAKVFRDNQVMQERIMDSNDLER 128
Query: 229 DRCITIKS 252
+R ITI S
Sbjct: 129 ERGITILS 136
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +3
Query: 333 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAI 488
K +N+ID+PGH DF EV L + DG L QT VL++A+
Sbjct: 144 KNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVVDSVEGPMPQTRFVLKKAL 195
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 57.6 bits (133), Expect = 7e-09
Identities = 24/60 (40%), Positives = 42/60 (70%)
Frame = +1
Query: 73 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 252
+D++ N+RN++++AHVDHGK+TL DS++ +A + + + R D+ E++R ITI S
Sbjct: 76 LDRRDNVRNIAIVAHVDHGKTTLVDSMLRQAKVFRDNQVMQERIMDSNDLERERGITILS 135
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +3
Query: 333 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAI 488
K +N+ID+PGH DF EV L + DG L QT VL++A+
Sbjct: 143 KNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVVDSVEGPMPQTRFVLKKAL 194
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/108 (27%), Positives = 53/108 (49%)
Frame = +3
Query: 321 EKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERI 500
+ K +L N++D+PGHV+FS E+TA+LR+ DGA+ TE +R AI + +
Sbjct: 203 DSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEGVMVNTERAIRHAIQDHL 262
Query: 501 KPICS*TKWTVLFLSSNLKLKNYTRRFQRIVENVNVIIATYNDDGGPM 644
+ K L L ++ + + +E +N I+ + G +
Sbjct: 263 PIVVVINKVDRLITELKLPPRDAYYKLRHTIEVINNHISAASTTAGDL 310
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Frame = +1
Query: 67 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA---GETRFTDTRKDEQDRC 237
G+M +RN++++ H+ HGK+ D LV + ++ A ++TDTR DEQ+R
Sbjct: 130 GLMSNPALVRNVALVGHLQHGKTVFMDMLVEQTHHMSTFNAKNEKHMKYTDTRVDEQERN 189
Query: 238 ITIKSTP 258
I+IK+ P
Sbjct: 190 ISIKAVP 196
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/108 (27%), Positives = 53/108 (49%)
Frame = +3
Query: 321 EKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERI 500
+ K +L N++D+PGHV+FS E+TA+LR+ DGA+ TE +R AI + +
Sbjct: 203 DSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEGVMVNTERAIRHAIQDHL 262
Query: 501 KPICS*TKWTVLFLSSNLKLKNYTRRFQRIVENVNVIIATYNDDGGPM 644
+ K L L ++ + + +E +N I+ + G +
Sbjct: 263 PIVVVINKVDRLITELKLPPRDAYYKLRHTIEVINNHISAASTTAGDL 310
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Frame = +1
Query: 67 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA---GETRFTDTRKDEQDRC 237
G+M +RN++++ H+ HGK+ D LV + ++ A ++TDTR DEQ+R
Sbjct: 130 GLMSNPALVRNVALVGHLQHGKTVFMDMLVEQTHHMSTFNAKNEKHMKYTDTRVDEQERN 189
Query: 238 ITIKSTP 258
I+IK+ P
Sbjct: 190 ISIKAVP 196
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 54.8 bits (126), Expect = 5e-08
Identities = 28/56 (50%), Positives = 34/56 (60%)
Frame = +3
Query: 345 INLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPIC 512
IN+ID+PGHVDF+ EV ALRV DGA+ Q+ETV RQA + IC
Sbjct: 163 INIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRIC 218
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +1
Query: 85 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGE----TRFTDTRKDEQDRCITIKS 252
++ RN+ ++AH+D GK+T T+ ++ G + GE T D + EQ+R ITI S
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTG--RNYKIGEVHEGTATMDWMEQEQERGITITS 151
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 54.0 bits (124), Expect = 9e-08
Identities = 27/54 (50%), Positives = 35/54 (64%)
Frame = +1
Query: 88 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIK 249
NIRN S+IAH+DHGKSTL D L+ G + R + +F D E++R ITIK
Sbjct: 85 NIRNFSIIAHIDHGKSTLADKLLQVTGTVQN-RDMKEQFLDNMDLERERGITIK 137
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +3
Query: 339 FLINLIDSPGHVDFSSEVTAALRVTDGAL 425
F +NLID+PGHVDFS EV+ +L +GAL
Sbjct: 152 FCLNLIDTPGHVDFSYEVSRSLAACEGAL 180
>At5g25230.1 68418.m02991 elongation factor Tu family protein
translation Elongation Factor 2, Schizosaccharomyces
pombe, PIR:T39902
Length = 973
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Frame = +1
Query: 67 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA---GETRFTDTRKDEQDRC 237
G+M +RN++++ H+ HGK+ D LV + ++ A R+TDTR DEQ+R
Sbjct: 116 GLMSNPALVRNVALVGHLQHGKTVFMDMLVEQTHRMSTFNAENDKHMRYTDTRVDEQERN 175
Query: 238 ITIKSTP 258
I+IK+ P
Sbjct: 176 ISIKAVP 182
Score = 51.6 bits (118), Expect = 5e-07
Identities = 27/95 (28%), Positives = 48/95 (50%)
Frame = +3
Query: 321 EKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERI 500
+ K +L N++D+PG+V+FS E+TA+LR+ DGA+ TE +R AI + +
Sbjct: 189 DSRSKSYLCNIMDTPGNVNFSDEMTASLRLADGAVFIVDAAQGVMVNTERAIRHAIQDHL 248
Query: 501 KPICS*TKWTVLFLSSNLKLKNYTRRFQRIVENVN 605
+ K L L ++ + + +E +N
Sbjct: 249 PIVVVINKVDRLITELKLPPRDAYYKLRYTIEVIN 283
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 48.8 bits (111), Expect = 3e-06
Identities = 25/54 (46%), Positives = 36/54 (66%)
Frame = +1
Query: 91 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 252
IRN S+IAH+DHGKSTL D L+ G I G+ ++ D K +++R IT+K+
Sbjct: 66 IRNFSIIAHIDHGKSTLADRLMELTGTIKKGH-GQPQYLD--KLQRERGITVKA 116
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +3
Query: 321 EKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 425
++ G+L+NLID+PGHVDFS EV+ +L GAL
Sbjct: 129 DQEASGYLLNLIDTPGHVDFSYEVSRSLSACQGAL 163
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/50 (48%), Positives = 31/50 (62%)
Frame = +3
Query: 333 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQ 482
K + +N+ID+PGHVDF+ EV ALRV DGA+ Q+ TV RQ
Sbjct: 131 KDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQ 180
Score = 37.1 bits (82), Expect = 0.011
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Frame = +1
Query: 73 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII-----AGARAGETRFTDTRKDEQDRC 237
MDK +RN+ + AH+D GK+TLT+ ++ G I R G D+ E+++
Sbjct: 62 MDK---LRNIGISAHIDSGKTTLTERVLFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKG 118
Query: 238 ITIKSTPSLCS 270
ITI+S + C+
Sbjct: 119 ITIQSAATYCT 129
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/50 (48%), Positives = 31/50 (62%)
Frame = +3
Query: 333 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQ 482
K + +N+ID+PGHVDF+ EV ALRV DGA+ Q+ TV RQ
Sbjct: 131 KDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQ 180
Score = 37.1 bits (82), Expect = 0.011
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Frame = +1
Query: 73 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII-----AGARAGETRFTDTRKDEQDRC 237
MDK +RN+ + AH+D GK+TLT+ ++ G I R G D+ E+++
Sbjct: 62 MDK---LRNIGISAHIDSGKTTLTERVLFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKG 118
Query: 238 ITIKSTPSLCS 270
ITI+S + C+
Sbjct: 119 ITIQSAATYCT 129
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 48.0 bits (109), Expect = 6e-06
Identities = 26/70 (37%), Positives = 38/70 (54%)
Frame = +1
Query: 43 NFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKD 222
+FTV RG ++K+ N+ I HVDHGK+TLT +L I + A + D +
Sbjct: 63 SFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDEIDAAPE 122
Query: 223 EQDRCITIKS 252
E+ R ITI +
Sbjct: 123 ERARGITINT 132
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 34.3 bits (75), Expect = 0.077
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +1
Query: 97 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITI 246
N+ I HVDHGK+TLT ++ A+A D +E+ R ITI
Sbjct: 69 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITI 118
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 73 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 168
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLG 32
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 73 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 168
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLG 32
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 73 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 168
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLG 32
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 73 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 168
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLG 32
>At5g39960.1 68418.m04846 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 616
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +1
Query: 28 GAQSVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 201
G+Q T + + +D+ + ++++ + GKSTL ++L+ + ++ G AG TR
Sbjct: 291 GSQDDVLTDENLSDEIDESKLPLQLAIVGKPNVGKSTLLNALLEEERVLVGPEAGLTR 348
>At1g61180.1 68414.m06894 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 889
Score = 31.5 bits (68), Expect = 0.54
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +3
Query: 528 TVLFLSSNLKLKNYTRRFQRIVENVNVIIATYNDDGGPMGECVSTL 665
T LFL SN KLKN F R ++ + V+ +YN D + E +S L
Sbjct: 536 TTLFLQSN-KLKNLPGAFIRYMQKLVVLDLSYNRDFNKLPEQISGL 580
>At1g58220.1 68414.m06612 myb family transcription factor contains
Pfam profile: PF00249: Myb-like DNA-binding domain
Length = 834
Score = 31.5 bits (68), Expect = 0.54
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +2
Query: 110 SPTSITASQPSRTRWFPRPVSLLVREPERPVSLT-RVRTNKTVASPLNLRH 259
SP + + FPRP S+L PV + TN PLNLRH
Sbjct: 551 SPKAELVKSAASAASFPRPSSMLSAPKADPVKIVPAAATNTKSVGPLNLRH 601
>At1g61300.1 68414.m06909 disease resistance protein (NBS-LRR
class), putative domain signature NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 762
Score = 31.1 bits (67), Expect = 0.72
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +3
Query: 528 TVLFLSSNLKLKNYTRRFQRIVENVNVIIATYNDDGGPMGECVSTL 665
T LFL SN +LKN + F R ++ + V+ +YN D + E +S L
Sbjct: 425 TTLFLQSN-QLKNLSGEFIRYMQKLVVLDLSYNRDFNKLPEQISGL 469
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 30.7 bits (66), Expect = 0.95
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 472 TVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKS 374
T S T PD ST T APSVT+ + + EK+
Sbjct: 383 TASPATVVPDQDSTITAAPSVTQEDSAFNTEKT 415
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 30.7 bits (66), Expect = 0.95
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 472 TVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKS 374
T S T PD ST T APSVT+ + + EK+
Sbjct: 644 TASPATVVPDQDSTITAAPSVTQEDSAFNTEKT 676
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 100 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 201
++++ HVDHGK+TL D + K+ + A G T+
Sbjct: 504 ITIMGHVDHGKTTLLD-YIRKSKVAASEAGGITQ 536
>At5g17810.1 68418.m02088 homeobox-leucine zipper transcription
factor family protein similar to to PRESSED FLOWER
(GP:17907768) {Arabidopsis thaliana};
Length = 268
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 110 SPTSITASQPSRTRWFPRPVSLLVRE 187
SP+S T+++P R RW P+P +L+ E
Sbjct: 9 SPSS-TSTEPVRARWSPKPEQILILE 33
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 97 NMSVIAHVDHGKSTLTDSLVSKAGIIA 177
N++++ HVD GKSTL+ L+ G I+
Sbjct: 241 NLAIVGHVDSGKSTLSGRLLHLLGRIS 267
>At3g03660.1 68416.m00369 homeobox-leucine zipper transcription
factor family protein similar to to PRESSED FLOWER
(GP:17907768) {Arabidopsis thaliana}
Length = 199
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 110 SPTSITASQPSRTRWFPRPVSLLVRE 187
S + T+++P R+RW P+P +L+ E
Sbjct: 20 SASGSTSAEPVRSRWSPKPEQILILE 45
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +1
Query: 100 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAG 192
++V+ HVDHGK++L D+L + + +A AG
Sbjct: 222 VTVMGHVDHGKTSLLDALRNTS--VAAREAG 250
>At1g04220.1 68414.m00412 beta-ketoacyl-CoA synthase, putative
Strong similarity to beta-keto-Coa synthase gb|U37088
from Simmondsia chinensis, GI:4091810
Length = 528
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -2
Query: 494 LGNSLTQYCFGLYTHTRHTVNNHKGSISDTECSCYFRREIN 372
L N + C Y HTV HKGS D +C ++RE N
Sbjct: 299 LSNRSSDRCRSKY-QLIHTVRTHKGS-DDNAFNCVYQREDN 337
>At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (ATHIM)
identical to SP|P34881 DNA (cytosine-5)-methyltransferase
AthI (EC 2.1.1.37) {Arabidopsis thaliana}
Length = 1534
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 591 VENVNVIIATYNDDGGPMGECVST 662
V+N NVI+ + GG +CVST
Sbjct: 1142 VDNCNVILRAIMEKGGDQDDCVST 1165
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 27.5 bits (58), Expect = 8.9
Identities = 25/68 (36%), Positives = 32/68 (47%)
Frame = -3
Query: 475 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 296
ST + T TP T + +T APS T +A TSE+ S + K S S SG V
Sbjct: 294 STPTPSTPTPSTPTPSTPAPS-TPAAGKTSEKGSESASMKKESNSKSES-ESAASGSVSK 351
Query: 295 TKSFSSSS 272
TK + S
Sbjct: 352 TKETNKGS 359
>At2g13690.1 68415.m01510 PRLI-interacting factor, putative similar
to PRLI-interacting factor G [Arabidopsis thaliana]
GI:11139264 (PMID:9765207); supporting cDNA
gi|26450291|dbj|AK117606.1|
Length = 544
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 205 TDTRKDEQDRCITIKSTPSLCSSSLK 282
T+T ++E+D + + STP+L S S +
Sbjct: 102 TETTQEEEDDAVVVDSTPNLRSESFR 127
>At1g12080.2 68414.m01397 expressed protein
Length = 138
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 463 VCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 371
V T TP + +A VT + AV EEK T
Sbjct: 85 VITETPVVEEEEKKAEEVTETPAVVEEEKKT 115
>At1g12080.1 68414.m01396 expressed protein
Length = 104
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 463 VCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 371
V T TP + +A VT + AV EEK T
Sbjct: 51 VITETPVVEEEEKKAEEVTETPAVVEEEKKT 81
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,211,828
Number of Sequences: 28952
Number of extensions: 310049
Number of successful extensions: 1073
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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