Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060667.seq
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.10c |tif512||translation initiation factor|Schizosacchar...   106   2e-24
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...   106   2e-24
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    28   1.3  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    26   5.2  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   6.9  

>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score =  106 bits (255), Expect = 2e-24
 Identities = 47/76 (61%), Positives = 57/76 (75%)
 Frame = +2

Query: 44  MGDIEDTHFETGDSGXSXTFPMQCSXLRKNGFXMLXGRPCKIVEMSTSKTGKHGHAKVHL 223
           M + E   FE G++G S TFPMQCS LRKNG  ++ GRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1   MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60

Query: 224 VGIXXFNGKKLKISVP 271
           V +  FNG+K +   P
Sbjct: 61  VALDIFNGRKYEDMSP 76



 Score = 78.2 bits (184), Expect = 9e-16
 Identities = 35/75 (46%), Positives = 51/75 (68%)
 Frame = +1

Query: 250 KVEDICPSTHXMXVPHVKREDYQLTDISDDGYLXLXADNGDLR*DLKIPDGDLGTXLRTD 429
           K ED+ PSTH M VP VKR++YQL +I DDGYL L   +G  + D+++P+G+LG  +   
Sbjct: 70  KYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGELGNEIEEG 128

Query: 430 FDSGKELLCTVAEIL 474
           F+ GK+L+ TV   +
Sbjct: 129 FEEGKDLIITVVSAM 143


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score =  106 bits (255), Expect = 2e-24
 Identities = 47/76 (61%), Positives = 57/76 (75%)
 Frame = +2

Query: 44  MGDIEDTHFETGDSGXSXTFPMQCSXLRKNGFXMLXGRPCKIVEMSTSKTGKHGHAKVHL 223
           M + E   FE G++G S TFPMQCS LRKNG  ++ GRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1   MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60

Query: 224 VGIXXFNGKKLKISVP 271
           V +  FNG+K +   P
Sbjct: 61  VALDIFNGRKYEDMSP 76



 Score = 78.6 bits (185), Expect = 7e-16
 Identities = 35/75 (46%), Positives = 51/75 (68%)
 Frame = +1

Query: 250 KVEDICPSTHXMXVPHVKREDYQLTDISDDGYLXLXADNGDLR*DLKIPDGDLGTXLRTD 429
           K ED+ PSTH M VP VKR++YQL +I DDGYL L   +G  + D+++P+G+LG  +   
Sbjct: 70  KYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGELGNEIEEG 128

Query: 430 FDSGKELLCTVAEIL 474
           FD G++L+ TV   +
Sbjct: 129 FDEGRDLIITVVSAM 143


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 136 FRYAEXSSMQDC*NVHIQNRKARXR*SSLGWD 231
           + + E   +Q C N+  +N +A  R SS GWD
Sbjct: 41  YHHLEKGLLQQCFNLVKKNMEALYRQSSFGWD 72


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +1

Query: 268 PSTHXMXV---PHVKREDYQLTDISDDGYL 348
           PS H   +     +KREDY+LT  ++ GYL
Sbjct: 78  PSKHLCFICTTEKIKREDYELTLCANCGYL 107


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 529 FYLXRAVFCFDGDDALFTAGFQPRCTTIPCRCRSQYA 419
           F L    F FDG +AL+T     +   +  R ++QY+
Sbjct: 546 FPLIAGEFQFDGCEALWTVSISGKLRNMKSRIQAQYS 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,430
Number of Sequences: 5004
Number of extensions: 40978
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)