Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060667.seq
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 103 1e-22
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 94 7e-20
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 85 3e-17
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 75 3e-16
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659 44 8e-05
08_02_0610 + 19307537-19308011,19308187-19310846 29 3.1
06_01_0458 + 3269069-3269081,3269113-3269741 28 7.1
02_02_0735 - 13504360-13504516,13504682-13504797,13505030-135051... 28 7.1
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347... 28 7.1
01_01_0814 + 6339906-6340173,6340286-6340501,6341908-6342056,634... 27 9.4
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 103 bits (247), Expect = 1e-22
Identities = 46/77 (59%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Frame = +2
Query: 44 MGDIEDTHFET-GDSGXSXTFPMQCSXLRKNGFXMLXGRPCKIVEMSTSKTGKHGHAKVH 220
M D E+ HFE+ D+G S T+P Q +RKNG+ ++ RPCK+VE+STSKTGKHGHAK H
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
Query: 221 LVGIXXFNGKKLKISVP 271
VGI FNGKKL+ VP
Sbjct: 61 FVGIDIFNGKKLEDIVP 77
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/73 (45%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Frame = +1
Query: 250 KVEDICPSTHXMXVPHVKREDYQLTDISDDGYLXLXADNGDLR*DLKIP-DGDLGTXLRT 426
K+EDI PS+H VPHV R DYQL DIS+DG++ L ++G+ + DL++P D L ++
Sbjct: 71 KLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDDTLTNQIKN 130
Query: 427 DF-DSGKELLCTV 462
F + GK+++ TV
Sbjct: 131 GFGEEGKDMILTV 143
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 94.3 bits (224), Expect = 7e-20
Identities = 45/81 (55%), Positives = 56/81 (69%), Gaps = 5/81 (6%)
Frame = +2
Query: 44 MGDIEDTHFET-GDSGXSXTFPMQCSXLRKNGFXMLXGRPCK----IVEMSTSKTGKHGH 208
M D E+ HFE+ D+G S T+P Q +RKNG+ ++ RPCK +VE+STSKTGKHGH
Sbjct: 14 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKGFGKVVEVSTSKTGKHGH 73
Query: 209 AKVHLVGIXXFNGKKLKISVP 271
AK H V I FNGKKL+ VP
Sbjct: 74 AKCHFVAIDIFNGKKLEDIVP 94
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Frame = +1
Query: 250 KVEDICPSTHXMXVPHVKREDYQLTDISDDGYLXLXADNGDLR*DLKIP-DGDLGTXLRT 426
K+EDI PS+H VPHV R +YQL DIS+DG++ L ++G+ + DL++P D L ++T
Sbjct: 88 KLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDLRLPTDDSLLGQIKT 147
Query: 427 DFDSGKELLCTV 462
F GK+L+ TV
Sbjct: 148 GFGEGKDLVVTV 159
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 85.4 bits (202), Expect = 3e-17
Identities = 45/90 (50%), Positives = 55/90 (61%), Gaps = 14/90 (15%)
Frame = +2
Query: 44 MGDIEDTHFET-GDSGXSXTFPMQCSXLRKNGFXMLXGRPCK-------------IVEMS 181
M D E+ HFE+ D+G S T+P Q +RKNG ++ RPCK +VE+S
Sbjct: 1323 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKWSGNHASLLVDTKVVEVS 1382
Query: 182 TSKTGKHGHAKVHLVGIXXFNGKKLKISVP 271
TSKTGKHGHAK H V I FNGKKL+ VP
Sbjct: 1383 TSKTGKHGHAKCHFVAIDIFNGKKLEDIVP 1412
Score = 73.7 bits (173), Expect = 1e-13
Identities = 35/72 (48%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Frame = +1
Query: 250 KVEDICPSTHXMXVPHVKREDYQLTDISDDGYLXLXADNGDLR*DLKIP-DGDLGTXLRT 426
K+EDI PS+H VPHV R DYQL DIS+DG++ L ++G + DL++P D L T ++
Sbjct: 1406 KLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGGTKDDLRLPSDEALLTQIKD 1465
Query: 427 DFDSGKELLCTV 462
F GK+L+ TV
Sbjct: 1466 GFAEGKDLIVTV 1477
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 74.9 bits (176), Expect = 5e-14
Identities = 34/72 (47%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Frame = +1
Query: 250 KVEDICPSTHXMXVPHVKREDYQLTDISDDGYLXLXADNGDLR*DLKIP-DGDLGTXLRT 426
K+EDI PS+H VPHV R +YQL DIS+DG++ L +NG+ + DL++P D +L + ++
Sbjct: 103 KLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLSQIKD 162
Query: 427 DFDSGKELLCTV 462
F GK+L+ TV
Sbjct: 163 GFGEGKDLVVTV 174
Score = 53.6 bits (123), Expect(2) = 3e-16
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +2
Query: 164 KIVEMSTSKTGKHGHAKVHLVGIXXFNGKKLKISVP 271
K+VE+STSKTGKHGHAK H V I F KKL+ VP
Sbjct: 74 KVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVP 109
Score = 48.8 bits (111), Expect(2) = 3e-16
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +2
Query: 44 MGDIEDTHFET-GDSGXSXTFPMQCSXLRKNGFXMLXGRPCK 166
M D E+ HFE+ D+G S T+P Q +RKNG+ ++ RPCK
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCK 42
>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
Length = 175
Score = 44.4 bits (100), Expect = 8e-05
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Frame = +1
Query: 295 HVKREDYQLTDISDDG-YLXLXADNGDLR*DLKIPDGD-LGTXLRTDFDSGKELLCTV 462
H+ R +YQL DIS+DG ++ L ++G+ + DL +P D L ++T F GK+++ TV
Sbjct: 46 HMNRTNYQLIDISEDGLFVSLLTESGNTKDDLGLPTYDNLLGQIKTGFGEGKDVVVTV 103
>08_02_0610 + 19307537-19308011,19308187-19310846
Length = 1044
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 70 EVCVFDVTHCCVLNLTTVRNDM 5
+VC FD+ CC L T+ NDM
Sbjct: 835 DVCHFDLRTCCALPPATLENDM 856
>06_01_0458 + 3269069-3269081,3269113-3269741
Length = 213
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 137 FXMLXGRPCKIVEMSTSKTGKHGHAKVHLVGIXXFNGKKLKISVPP 274
F + +++ + T + GH +HLV I N +K ISVPP
Sbjct: 118 FHLTASSSARVIILLTRAVVESGHTILHLVEICWVNPEK-AISVPP 162
>02_02_0735 -
13504360-13504516,13504682-13504797,13505030-13505188,
13505514-13505571,13505863-13505979,13506061-13506123,
13506348-13506532
Length = 284
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 529 FYLXRAVFCFDGDDALFTAGFQP 461
F + A++C D ALFTA FQP
Sbjct: 189 FTILYAIWCIDRGGALFTAIFQP 211
>01_06_1303 -
36132588-36132710,36133879-36134103,36134318-36134713,
36135352-36135547,36135591-36135740,36135818-36135924,
36135987-36136094,36136354-36136435,36136436-36136536,
36136778-36136996,36137455-36137583,36137665-36137742,
36137816-36137929,36138071-36138230,36139224-36139441
Length = 801
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = +2
Query: 5 HIIPDRC*IQNTTMGDIEDTHFETGDSGXSXTFPMQCSXLRKNGFXMLXGRPCKIVEMS 181
H+ +Q ++ D E H T + TFPM L N + GR CK V +S
Sbjct: 423 HVADPTSLVQPRSIIDREAMHRGTSIFLPTATFPMFPERLAMNAMSLQQGRGCKSVTVS 481
>01_01_0814 +
6339906-6340173,6340286-6340501,6341908-6342056,
6342157-6342433,6342736-6343019
Length = 397
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = -3
Query: 534 VGFIXRELFFALTAMTHSSPQDFSHGA 454
V FI L L A H QDFSHGA
Sbjct: 86 VDFIAEGLGVPLLAPYHGESQDFSHGA 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,523,821
Number of Sequences: 37544
Number of extensions: 292883
Number of successful extensions: 565
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -