Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060667.seq
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...   108   3e-24
Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...    98   4e-21

>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score =  108 bits (260), Expect = 3e-24
 Identities = 49/72 (68%), Positives = 54/72 (75%)
 Frame = +2

Query: 56  EDTHFETGDSGXSXTFPMQCSXLRKNGFXMLXGRPCKIVEMSTSKTGKHGHAKVHLVGIX 235
           +D HF TGDSG + TFP QCS LRKN   M+ GRPCKIVEMSTSKTGKHGHAKVH+V I 
Sbjct: 7   DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66

Query: 236 XFNGKKLKISVP 271
            F  KKL+   P
Sbjct: 67  IFTSKKLEDICP 78



 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
 Frame = +1

Query: 250 KVEDICPSTHXMXVPHVKREDYQLTDISDDGYLXL-XADNGDLR*DLKIPDGDLGTXLRT 426
           K+EDICPSTH M VP VKR +Y L  I DDGY  L   ++ + + DLK+PD +LG  +R 
Sbjct: 72  KLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTELGQQIRD 130

Query: 427 DF--DSGKELLCTVAEI 471
            +  D G  L+  V+ I
Sbjct: 131 AYEKDEGSVLVQVVSAI 147


>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score = 98.3 bits (234), Expect = 4e-21
 Identities = 44/72 (61%), Positives = 53/72 (73%)
 Frame = +2

Query: 56  EDTHFETGDSGXSXTFPMQCSXLRKNGFXMLXGRPCKIVEMSTSKTGKHGHAKVHLVGIX 235
           ++  F++ +SG + TFP QCS LRKN   M+ GRPCKIVEMSTSKTGKHGHAKVH+V I 
Sbjct: 41  DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100

Query: 236 XFNGKKLKISVP 271
            F  KKL+   P
Sbjct: 101 IFTTKKLEDICP 112



 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
 Frame = +1

Query: 250 KVEDICPSTHXMXVPHVKREDYQLTDISDDGYLXLXADNGDLR*DLKIPDGDLGTXLR-- 423
           K+EDICPSTH M VP VKR +Y L  I D     +  ++ +L+ DLK+P+GDLG  +R  
Sbjct: 106 KLEDICPSTHNMDVPVVKRREYILMSIEDGFCSLMDPESCELKDDLKMPEGDLGNTIREA 165

Query: 424 TDFDSGKELLCTVA 465
            + D G  L+  VA
Sbjct: 166 LEKDEGSVLVQVVA 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,301,798
Number of Sequences: 27780
Number of extensions: 249507
Number of successful extensions: 488
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)