Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060667.seq
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13950.1 68414.m01639 eukaryotic translation initiation facto...    97   9e-21
At1g69410.1 68414.m07972 eukaryotic translation initiation facto...    94   6e-20
At1g26630.1 68414.m03243 eukaryotic translation initiation facto...    89   2e-18
At2g05350.1 68415.m00563 hypothetical protein                          29   2.0  

>At1g13950.1 68414.m01639 eukaryotic translation initiation factor
           5A-1 / eIF-5A 1 identical to SP|Q9XI91 Eukaryotic
           translation initiation factor 5A-1 (eIF-5A 1)
           {Arabidopsis thaliana}
          Length = 158

 Score = 97.1 bits (231), Expect = 9e-21
 Identities = 41/72 (56%), Positives = 52/72 (72%)
 Frame = +2

Query: 56  EDTHFETGDSGXSXTFPMQCSXLRKNGFXMLXGRPCKIVEMSTSKTGKHGHAKVHLVGIX 235
           E+ HFE+ D+G S T+P Q   +RKNG+ ++  RPCK+VE+STSKTGKHGHAK H V I 
Sbjct: 4   EEHHFESSDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63

Query: 236 XFNGKKLKISVP 271
            F  KKL+  VP
Sbjct: 64  IFTSKKLEDIVP 75



 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 38/72 (52%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
 Frame = +1

Query: 250 KVEDICPSTHXMXVPHVKREDYQLTDISDDGYLXLXADNGDLR*DLKIPDGD-LGTXLRT 426
           K+EDI PS+H   VPHV R DYQL DIS+DGY+ L  DNG  + DLK+P+ D L   +++
Sbjct: 69  KLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLLQQIKS 128

Query: 427 DFDSGKELLCTV 462
            FD GK+L+ +V
Sbjct: 129 GFDDGKDLVVSV 140


>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
           5A, putative / eIF-5A, putative strong similarity to
           eukaryotic initiation factor 5A (2) (Nicotiana
           plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
           translation initiation factor 5A-1 (eIF-5A 1)
           {Lycopersicon esculentum}
          Length = 158

 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 40/72 (55%), Positives = 51/72 (70%)
 Frame = +2

Query: 56  EDTHFETGDSGXSXTFPMQCSXLRKNGFXMLXGRPCKIVEMSTSKTGKHGHAKVHLVGIX 235
           ++ HFE+ D+G S T+P Q   +RK G  ++ GRPCK+VE+STSKTGKHGHAK H V I 
Sbjct: 4   DEHHFESSDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAID 63

Query: 236 XFNGKKLKISVP 271
            F  KKL+  VP
Sbjct: 64  IFTSKKLEDIVP 75



 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 37/72 (51%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
 Frame = +1

Query: 250 KVEDICPSTHXMXVPHVKREDYQLTDISDDGYLXLXADNGDLR*DLKIP-DGDLGTXLRT 426
           K+EDI PS+H   VPHV R DYQL DIS+DG++ L  DNG  + DLK+P D  L T L+ 
Sbjct: 69  KLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALLTQLKN 128

Query: 427 DFDSGKELLCTV 462
            F+ GK+++ +V
Sbjct: 129 GFEEGKDIVVSV 140


>At1g26630.1 68414.m03243 eukaryotic translation initiation factor
           5A, putative / eIF-5A, putative strong similariy to
           SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1
           (eIF-5A 1) {Lycopersicon esculentum}
          Length = 159

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 38/72 (52%), Positives = 48/72 (66%)
 Frame = +2

Query: 56  EDTHFETGDSGXSXTFPMQCSXLRKNGFXMLXGRPCKIVEMSTSKTGKHGHAKVHLVGIX 235
           ++ HFE  +SG S T+P     +RK G  ++  RPCK+VE+STSKTGKHGHAK H V I 
Sbjct: 4   DEHHFEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63

Query: 236 XFNGKKLKISVP 271
            F  KKL+  VP
Sbjct: 64  IFTAKKLEDIVP 75



 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 35/72 (48%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
 Frame = +1

Query: 250 KVEDICPSTHXMXVPHVKREDYQLTDISDDGYLXLXADNGDLR*DLKIP-DGDLGTXLRT 426
           K+EDI PS+H   VPHV R DYQL DI++DG++ L  D+G  + DLK+P D  L   +R 
Sbjct: 69  KLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMRL 128

Query: 427 DFDSGKELLCTV 462
            FD GK+++ +V
Sbjct: 129 GFDEGKDIVVSV 140


>At2g05350.1 68415.m00563 hypothetical protein
          Length = 453

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 383 TSKFRMVTSAHXCVLTSTAARNCCAPWLKSCGEE 484
           TS+ RMV +   C+  +T A NC   + K  G+E
Sbjct: 110 TSQLRMVFAQVPCICFNTIAYNCPGTFFKQLGQE 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,421,585
Number of Sequences: 28952
Number of extensions: 229007
Number of successful extensions: 455
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)