Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060665.seq
         (687 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    26   0.25 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   4.1  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    22   5.4  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   5.4  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   9.5  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   9.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 263  EGESRRAPSAGPMLPVAAVTRRTSRTV 343
            +  S  APS  PM+P   VT  TSR +
Sbjct: 2287 DASSTMAPSTTPMVPDKPVTTTTSRPI 2313


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 255 PSCLFVLSLAVLRAVQAELHQCHHRRDL 172
           PS L V  + +L +    +HQ HH++++
Sbjct: 295 PSKLDVEQMNLLHSNDLNMHQQHHQQNM 322


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 223 TPRCPSGTPSMSPQKGSPDTSA 158
           TP+      SMSPQ  S + SA
Sbjct: 150 TPKTSPNEASMSPQSTSSNNSA 171


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 223 TPRCPSGTPSMSPQKGSPDTSA 158
           TP+      SMSPQ  S + SA
Sbjct: 170 TPKTSPNEASMSPQSTSSNNSA 191


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -2

Query: 413 ELLAVLNSSGA 381
           ELLA+L SSGA
Sbjct: 105 ELLAILGSSGA 115


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -2

Query: 413 ELLAVLNSSGA 381
           ELLA+L SSGA
Sbjct: 105 ELLAILGSSGA 115


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,958
Number of Sequences: 336
Number of extensions: 2911
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)