Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060665.seq
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    27   2.5  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    26   5.9  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.8  

>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
 Frame = -3

Query: 307 RQHGSSGWRSP-------ALAFTETFLFICVEPGSTPRCPSGTPSMSPQKGSPDTSA 158
           R+ GS  W++        A  F+  F   C+E  S  R  SG+PS S      D+S+
Sbjct: 221 RKQGSHNWKTSTNSQSRLAALFSSIFEDSCLEVDSVKRLLSGSPSSSSSPLKKDSSS 277


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -3

Query: 91  HAQQKLSL*TELKVRSLHCSGSTLS 17
           H QQ+ S    L VR L C  STLS
Sbjct: 159 HTQQRYSTLKRLMVRCLSCEYSTLS 183


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 305  AAWVQRMALSCSRLHGNLPVYLC*AWQYSALSKRNSINVTTEGISRYF 162
            A+W +R   SCS++   LP   C  ++Y    K+++++    G  R F
Sbjct: 2091 ASWTERRLQSCSQIEVTLPCVEC-FFKY----KKDALHTLLPGFMRCF 2133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,775
Number of Sequences: 5004
Number of extensions: 50342
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)