Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060665.seq
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0493 - 8866685-8866888,8866989-8867059,8867143-8867416,886...    32   0.49 
04_01_0216 - 2739742-2740381,2742346-2742883,2745014-2745911           29   2.6  
09_04_0323 - 16679565-16679939,16680328-16680660,16680721-166810...    29   4.6  
01_01_1236 - 10020837-10021041,10021746-10021831,10022552-100230...    29   4.6  
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365...    28   8.0  
06_01_0866 + 6582131-6583294                                           28   8.0  

>03_02_0493 -
           8866685-8866888,8866989-8867059,8867143-8867416,
           8867666-8868036,8868127-8868482,8868558-8868630,
           8869307-8869412,8869667-8869760,8870616-8870680,
           8871655-8871927
          Length = 628

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -3

Query: 628 RTDKLSLYFHTTHDSLVAFVLKGSNYIMGTARIDVVFNHSTHPKAIKQ 485
           R DK S    T H SLV+  ++G+NY   + R+D       HP+ IK+
Sbjct: 267 RLDKTSGQSPTKHSSLVSKYIRGNNYASSSQRLD-------HPRRIKE 307


>04_01_0216 - 2739742-2740381,2742346-2742883,2745014-2745911
          Length = 691

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -3

Query: 646 NXPRHNRTDKLSLYFHTTHDSLVAFVLKGSNYIMGTARIDVVFNHST 506
           N P+  +TD +++  ++  DS +   L  +  + GT   D+VFN ST
Sbjct: 183 NDPKE-KTDHIAIDINSVKDSAITTYLPKNVTLNGTMIADIVFNSST 228


>09_04_0323 -
           16679565-16679939,16680328-16680660,16680721-16681032,
           16683590-16683825,16683972-16684239
          Length = 507

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 275 RRAPSAGPMLPVAAVTRRTSRTVPHTYPSSVT 370
           RR PS+ P  P AA +    R  PHT  S +T
Sbjct: 58  RRRPSSAPHPPPAAASTSALRPRPHTQNSELT 89


>01_01_1236 -
           10020837-10021041,10021746-10021831,10022552-10023061,
           10023914-10025965
          Length = 950

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 512 VVENDINAGSSHYIIGPFQNKSYETVVCCVEI 607
           V+ + +  G S Y+  P  N SY+ +V CV +
Sbjct: 594 VMTSILQLGQSSYLPHPIDNDSYDRIVLCVRL 625


>11_01_0471 -
           3648871-3649078,3649841-3649926,3650111-3650155,
           3650306-3650815,3651700-3653757
          Length = 968

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 527 INAGSSHYIIGPFQNKSYETVVCCVEI 607
           +  G S Y+  P  N SY+ +V CV +
Sbjct: 601 LQLGQSSYLPHPIDNDSYDRIVLCVRL 627


>06_01_0866 + 6582131-6583294
          Length = 387

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 343 NSARGASSHRRYRQHGSSG 287
           N A+G+S HR+++ HG  G
Sbjct: 354 NGAQGSSQHRQHQHHGGGG 372


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,716,498
Number of Sequences: 37544
Number of extensions: 351018
Number of successful extensions: 1002
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)