Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060665.seq
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)               29   4.7  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1186

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
 Frame = +1

Query: 586  CRVLCG----NRVTVCLXDCDGXRLGGCEVK---LHQAEC 684
            C   CG    +R+ +CL D  G R+GGCEV    LH   C
Sbjct: 1095 CSTTCGGGSQHRIVMCLND-QGKRVGGCEVSKKPLHWQRC 1133


>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
          Length = 287

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 281 APSAGPMLPVAAVTRRTSRTVPHTYPSSV 367
           AP+  P  P AA      R+VP T PSSV
Sbjct: 112 APAPAPAAPSAAAAPAPVRSVPSTSPSSV 140


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 305  PVAAVTRRTSRTVPHTYPSSVTLNSEPRCC*AQPTIQL 418
            PVAA+  +T+++VPHT  +  T    P  C  Q T  L
Sbjct: 2027 PVAALATQTTQSVPHTMGNPTT--PRPPSCLTQQTSTL 2062


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,417,738
Number of Sequences: 59808
Number of extensions: 408642
Number of successful extensions: 1132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)