Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060665.seq
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70270-9|CAI79144.1|  261|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF272397-1|AAF76229.1|  237|Caenorhabditis elegans CEH-17 protein.     28   7.2  
AF003151-5|AAK18908.1|  237|Caenorhabditis elegans C.elegans hom...    28   7.2  

>Z70270-9|CAI79144.1|  261|Caenorhabditis elegans Hypothetical
           protein C53D6.11 protein.
          Length = 261

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 523 VFNHSTHPKAIKQKFRMWKQIK 458
           V+NH  + +A++  FR WK +K
Sbjct: 236 VYNHQDYREAVRNLFRKWKIVK 257


>AF272397-1|AAF76229.1|  237|Caenorhabditis elegans CEH-17 protein.
          Length = 237

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = -3

Query: 670 VTSLHNRLNXPRHNRTDKLSL---YFHTTHDSLVAFVLKGSNY 551
           +T+ HN  +    N T   S    Y +TTHDSL AF   G  Y
Sbjct: 57  LTTAHNTSSSSAGNSTSSSSSSSNYRNTTHDSLQAFFNTGLQY 99


>AF003151-5|AAK18908.1|  237|Caenorhabditis elegans C.elegans
           homeobox protein 17 protein.
          Length = 237

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = -3

Query: 670 VTSLHNRLNXPRHNRTDKLSL---YFHTTHDSLVAFVLKGSNY 551
           +T+ HN  +    N T   S    Y +TTHDSL AF   G  Y
Sbjct: 57  LTTAHNTSSSSAGNSTSSSSSSSNYRNTTHDSLQAFFNTGLQY 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,926,810
Number of Sequences: 27780
Number of extensions: 300975
Number of successful extensions: 812
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)