Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060665.seq
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    23   2.7  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    23   2.7  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           23   2.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.6  

>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
          protein.
          Length = 95

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 39 CKLLTFNSVYNDSFCCA 89
          C LL+F    NDS C A
Sbjct: 46 CDLLSFKGQVNDSACAA 62


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
          precursor protein.
          Length = 95

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 39 CKLLTFNSVYNDSFCCA 89
          C LL+F    NDS C A
Sbjct: 46 CDLLSFKGQVNDSACAA 62


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 39 CKLLTFNSVYNDSFCCA 89
          C LL+F    NDS C A
Sbjct: 21 CDLLSFKGQVNDSACAA 37


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 343 NSARGASSHRRYRQHGSSGW 284
           N++RG S       HGS  W
Sbjct: 392 NNSRGHSGQSSSHHHGSKSW 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,012
Number of Sequences: 438
Number of extensions: 3278
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)