Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060665.seq
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02660.1 68418.m00202 hypothetical protein contains Pfam prof...    30   1.7  
At2g38060.1 68415.m04672 transporter-related low similarity to v...    27   8.8  

>At5g02660.1 68418.m00202 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 629

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 562 LSKQKLRDCRVLCGNRVTVCLXDCD 636
           +SKQKL+DCR+L     ++C  +CD
Sbjct: 347 ISKQKLKDCRLL-ETPQSICFLECD 370


>At2g38060.1 68415.m04672 transporter-related low similarity to
           vesicular glutamate transporter 3 [Homo sapiens]
           GI:21213895, brain specific Na+-dependent inorganic
           phosphate cotransporter [Rattus norvegicus] GI:507415;
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 512

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 342 TVREVRLVTAATGSMGPADGALLLSPSRKPSCLFVLSLAVL 220
           +V  VR +  + G MGP    L L+ ++ PSC  V     L
Sbjct: 390 SVTSVRKIMQSIGFMGPGLSLLCLNFAKSPSCAAVFMTIAL 430


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,892,956
Number of Sequences: 28952
Number of extensions: 270631
Number of successful extensions: 743
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)