Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060664.seq
         (680 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    25   0.76 
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   2.3  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   9.3  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
 Frame = +3

Query: 513 GYVGPRCEFKDLDNSYVLKRPTADDG--DC---VHRGRCD-NGGLPGNPCVSRKRGC 665
           G+VGPRCE    D +  L  P ++ G  DC   V+   C+   G  G  C S+   C
Sbjct: 289 GFVGPRCEG---DINECLSNPCSNAGTLDCVQLVNDYHCNCKLGFMGRHCESKVNFC 342



 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 442 CLNGGVCFTVVISESPIYNCECQAGMWAR 528
           C NGGVC T+       + C C  G + +
Sbjct: 347 CQNGGVCTTIHAG----HKCTCPEGFYGK 371


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 64  RCKKVNTGNMSGRIVNADASKGFLFEIRXRSC 159
           RC K +  N + R+ +     G  F+I  ++C
Sbjct: 56  RCDKNSDNNGATRLASVRCPVGLAFDIERQTC 87


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +3

Query: 510 SGYVGPRCEFKDLDNSYV 563
           SGY+ P+C   D    ++
Sbjct: 252 SGYIKPKCVLSDHGTQFI 269


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,733
Number of Sequences: 336
Number of extensions: 2799
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)