Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060664.seq
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    28   1.1  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    28   1.1  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   7.7  

>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 613 HRPRWTQSPSSAVGRFKTYELSRSLNSH-RGPTYPLDTHSYKSGSPI 476
           H+  +  SP S+  RF   ++S   N+H  GP   L TH + S SP+
Sbjct: 31  HKLSYHISPLSS--RFSLADISVKENNHPNGPQLRLQTHFFHSSSPM 75


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 92  MFPVFTFLHRRSLAHDGGAVSTGARDIAS 6
           ++  F FLH R +A + G  S  +R++A+
Sbjct: 661 IYRAFVFLHNRDIAENNGVFSARSRNVAT 689


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 480 RYHNGEADSTIKTVVLRVLGLALKRRESDVD 388
           RYH  EA         R L  +LK+R SD D
Sbjct: 503 RYHRSEAHRRRTKRAFRRLAASLKKRPSDKD 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,372,674
Number of Sequences: 5004
Number of extensions: 42555
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)