Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060664.seq
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0057 - 483710-484309                                             31   1.1  
09_06_0081 + 20745627-20748144,20748211-20748308                       30   2.0  
03_06_0744 + 35910512-35910569,35911145-35911325,35912332-359124...    29   4.5  
02_05_0425 - 28845707-28846189,28846262-28846403,28846496-288469...    29   4.5  
09_04_0021 - 13861369-13861538,13862274-13862432,13862493-138627...    28   6.0  
10_07_0138 + 13325418-13325954                                         28   7.9  
04_04_0745 + 27716622-27717017                                         28   7.9  

>06_01_0057 - 483710-484309
          Length = 199

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +2

Query: 521 GPAVRVQGPGQLVCFETA---DS**WRLRPSRAVRQWRSSWQSXCVSEAWVR 667
           GPA R    G ++CFE A   DS  WR R S     W SS QS  +++ W R
Sbjct: 66  GPAARTSPAGTVLCFEDARGGDS-TWRFRYS----YWSSS-QSYVITKGWSR 111


>09_06_0081 + 20745627-20748144,20748211-20748308
          Length = 871

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = -2

Query: 667 PHPRFRDTXGLPGRPPLSHRPRWTQSPSSAVGRFKTYELSRSLNSHRGPTYPLDTHS 497
           PHPR          PP++    WT SP++A   F     S S  + R  T PL  H+
Sbjct: 589 PHPRASSAPA----PPVAAPRGWTVSPTTARYSFSDSGASSSSAAPRASTAPLALHA 641


>03_06_0744 +
           35910512-35910569,35911145-35911325,35912332-35912419,
           35912541-35912726,35913591-35913725,35913803-35913862,
           35914609-35914698,35915384-35915515,35916039-35916183,
           35916266-35916439,35916629-35916692,35916778-35916847,
           35917328-35917445,35918258-35918280,35918398-35918499,
           35919831-35920250,35920327-35920563
          Length = 760

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 128 PLLASALTIRP-DMFPVFTFLHRRSLAHDGGAVSTGARDI 12
           PLLA++   RP D+  +F+  H    AHD GAVSTGA  +
Sbjct: 24  PLLAASP--RPSDLAQMFS--HGADSAHDAGAVSTGASGV 59


>02_05_0425 -
           28845707-28846189,28846262-28846403,28846496-28846971,
           28848817-28848848,28849429-28849572,28849770-28849841,
           28850281-28850296
          Length = 454

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/60 (30%), Positives = 23/60 (38%)
 Frame = -2

Query: 631 GRPPLSHRPRWTQSPSSAVGRFKTYELSRSLNSHRGPTYPLDTHSYKSGSPISQR*SRLH 452
           GR P+ HR    +  S   G++  +     L            H YKSG   S R SR H
Sbjct: 59  GRAPVRHRHAQLRQVSDFTGQYPAWNHKYKLKDMVLKFSGSGRHQYKSGGSPSLRTSRFH 118


>09_04_0021 -
           13861369-13861538,13862274-13862432,13862493-13862720,
           13864057-13864246
          Length = 248

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/28 (42%), Positives = 22/28 (78%)
 Frame = +2

Query: 17  LWRP*KPRLRHERVIVDVKK*TQETCPG 100
           LW+P +P+L+ +R I +++K T+ +CPG
Sbjct: 164 LWKPREPKLKKQR-IRNMRK-TESSCPG 189


>10_07_0138 + 13325418-13325954
          Length = 178

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 587 WRLRPSRAVRQWRSSWQSXCVSEAWVRL 670
           WR   SR  R+WR SW+    S  W RL
Sbjct: 97  WR---SRCSRRWRRSWRRRRCSRRWRRL 121


>04_04_0745 + 27716622-27717017
          Length = 131

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/24 (45%), Positives = 20/24 (83%)
 Frame = +1

Query: 601 IAGGATMAVFLAIXVCLGSVGAAC 672
           +AG A++A+FLA+ + + S+G+AC
Sbjct: 1   MAGKASIALFLAVNLVVFSLGSAC 24


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,780,877
Number of Sequences: 37544
Number of extensions: 350350
Number of successful extensions: 1006
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)