BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV060664.seq (680 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_42397| Best HMM Match : rve (HMM E-Value=0.0007) 32 0.49 SB_33224| Best HMM Match : Retrotrans_gag (HMM E-Value=0.053) 32 0.49 SB_6077| Best HMM Match : EGF (HMM E-Value=0) 32 0.49 SB_32940| Best HMM Match : EGF (HMM E-Value=0) 31 1.1 SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5 SB_22957| Best HMM Match : EGF (HMM E-Value=7e-39) 30 1.5 SB_21553| Best HMM Match : Ribosomal_S30 (HMM E-Value=0.96) 30 1.5 SB_2152| Best HMM Match : EGF (HMM E-Value=0) 30 1.5 SB_50061| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0 SB_37908| Best HMM Match : Retrotrans_gag (HMM E-Value=0.067) 30 2.0 SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17) 30 2.0 SB_18963| Best HMM Match : Cyclotide (HMM E-Value=1.7) 30 2.0 SB_13803| Best HMM Match : rve (HMM E-Value=8.6e-14) 30 2.0 SB_11035| Best HMM Match : Retrotrans_gag (HMM E-Value=0.095) 30 2.0 SB_3027| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0 SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07) 30 2.0 SB_27735| Best HMM Match : Retrotrans_gag (HMM E-Value=0.097) 30 2.0 SB_27036| Best HMM Match : RVT_1 (HMM E-Value=0.00041) 30 2.0 SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0 SB_19685| Best HMM Match : Retrotrans_gag (HMM E-Value=0.061) 30 2.0 SB_16144| Best HMM Match : DMAP_binding (HMM E-Value=9.6) 30 2.0 SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6 SB_45116| Best HMM Match : EGF (HMM E-Value=0) 29 2.6 SB_34394| Best HMM Match : RVT_1 (HMM E-Value=8.7e-08) 29 2.6 SB_42855| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6 SB_20112| Best HMM Match : EGF (HMM E-Value=0) 29 4.6 SB_14964| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6 SB_9507| Best HMM Match : Cadherin (HMM E-Value=0) 29 4.6 SB_32123| Best HMM Match : Keratin_B2 (HMM E-Value=0.019) 29 4.6 SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1 SB_31904| Best HMM Match : Extensin_2 (HMM E-Value=0.5) 28 8.0 SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 28 8.0 SB_9918| Best HMM Match : Ribosomal_S30 (HMM E-Value=1.6) 28 8.0 >SB_42397| Best HMM Match : rve (HMM E-Value=0.0007) Length = 729 Score = 31.9 bits (69), Expect = 0.49 Identities = 19/52 (36%), Positives = 24/52 (46%) Frame = +3 Query: 525 PRCEFKDLDNSYVLKRPTADDGDCVHRGRCDNGGLPGNPCVSRKRGCGLQRP 680 P CEFK D S V+ + + VHR G LP N + +G L RP Sbjct: 9 PDCEFKTTDASEVVAIALLANHNLVHRNEAQPGRLPANTAL---KGPKLDRP 57 >SB_33224| Best HMM Match : Retrotrans_gag (HMM E-Value=0.053) Length = 222 Score = 31.9 bits (69), Expect = 0.49 Identities = 19/52 (36%), Positives = 24/52 (46%) Frame = +3 Query: 525 PRCEFKDLDNSYVLKRPTADDGDCVHRGRCDNGGLPGNPCVSRKRGCGLQRP 680 P CEFK D S V+ + + VHR G LP N + +G L RP Sbjct: 9 PDCEFKTTDASEVVAIALLANHNLVHRNEAQPGRLPANTAL---KGPKLDRP 57 >SB_6077| Best HMM Match : EGF (HMM E-Value=0) Length = 1165 Score = 31.9 bits (69), Expect = 0.49 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = +1 Query: 436 YYCLNGGVCFTVVISESPIYNCECQAGMWARGASSR 543 Y C NGG CF+ + S Y CEC G S+ Sbjct: 525 YLCRNGGSCFS---NNSTYYTCECPKGYTGHDCESK 557 >SB_32940| Best HMM Match : EGF (HMM E-Value=0) Length = 1025 Score = 30.7 bits (66), Expect = 1.1 Identities = 16/43 (37%), Positives = 20/43 (46%) Frame = +1 Query: 388 INVTFPTFKCEPEYSQYYCLNGGVCFTVVISESPIYNCECQAG 516 +NV+ + KC S YC N G C T S Y C+C G Sbjct: 309 LNVSVKSNKCIEPGSSVYCSNHGQCVTNFSMSS--YQCKCCGG 349 >SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2162 Score = 30.3 bits (65), Expect = 1.5 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = +3 Query: 510 SGYVGPRCEFKDLDNSYVLKRPTADDGDCVHRGRCDNG-GLPGNPCVSRKRGCGLQ 674 SGY GP+C D+D + +P G C++ G CDN G G C + RG Q Sbjct: 344 SGYEGPKC---DVDINECKVQP----GPCLNGGTCDNYLGTYGCSCKAGYRGKNCQ 392 >SB_22957| Best HMM Match : EGF (HMM E-Value=7e-39) Length = 201 Score = 30.3 bits (65), Expect = 1.5 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = +3 Query: 510 SGYVGPRCEFKDLDNSYVLKRPTADDGDCVHRGRCDNG-GLPGNPCVSRKRGCGLQ 674 SGY GP+C D+D + +P G C++ G CDN G G C + RG Q Sbjct: 138 SGYEGPKC---DVDINECKVQP----GPCLNGGTCDNYLGTYGCSCKAGYRGKNCQ 186 >SB_21553| Best HMM Match : Ribosomal_S30 (HMM E-Value=0.96) Length = 180 Score = 30.3 bits (65), Expect = 1.5 Identities = 17/52 (32%), Positives = 23/52 (44%) Frame = +3 Query: 525 PRCEFKDLDNSYVLKRPTADDGDCVHRGRCDNGGLPGNPCVSRKRGCGLQRP 680 P CEFK D S + + + VHR G +P N + +G L RP Sbjct: 9 PDCEFKTNDASEAVAIALLTNNNLVHRNEAQTGHIPAN---TAPKGPKLDRP 57 >SB_2152| Best HMM Match : EGF (HMM E-Value=0) Length = 1603 Score = 30.3 bits (65), Expect = 1.5 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = +3 Query: 510 SGYVGPRCEFKDLDNSYVLKRPTADDGDCVHRGRCDNG-GLPGNPCVSRKRGCGLQ 674 SGY GP+C D+D + +P G C++ G CDN G G C + RG Q Sbjct: 162 SGYEGPKC---DVDINECKVQP----GPCLNGGTCDNYLGTYGCSCKAGYRGKNCQ 210 >SB_50061| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1222 Score = 29.9 bits (64), Expect = 2.0 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +3 Query: 525 PRCEFKDLDNSYVLKRPTADDGDCVHRGRCDNGGLPGNPCVSRKRGCGLQRP 680 P CEFK D S + + + VHR G LP N + +G L RP Sbjct: 9 PDCEFKTTDASEAVAIALLANHNLVHRNEAQPGRLPAN---TAPKGPKLDRP 57 >SB_37908| Best HMM Match : Retrotrans_gag (HMM E-Value=0.067) Length = 449 Score = 29.9 bits (64), Expect = 2.0 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +3 Query: 525 PRCEFKDLDNSYVLKRPTADDGDCVHRGRCDNGGLPGNPCVSRKRGCGLQRP 680 P CEFK D S + + + VHR G LP N + +G L RP Sbjct: 9 PDCEFKTTDASEAVAIALLANHNLVHRNEAQPGRLPAN---TAPKGPKLDRP 57 >SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17) Length = 1590 Score = 29.9 bits (64), Expect = 2.0 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +3 Query: 525 PRCEFKDLDNSYVLKRPTADDGDCVHRGRCDNGGLPGNPCVSRKRGCGLQRP 680 P CEFK D S + + + VHR G LP N + +G L RP Sbjct: 9 PDCEFKTTDASEAVAIALLANHNLVHRNEAQPGRLPAN---TAPKGPKLDRP 57 >SB_18963| Best HMM Match : Cyclotide (HMM E-Value=1.7) Length = 155 Score = 29.9 bits (64), Expect = 2.0 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +3 Query: 525 PRCEFKDLDNSYVLKRPTADDGDCVHRGRCDNGGLPGNPCVSRKRGCGLQRP 680 P CEFK D S + + + VHR G LP N + +G L RP Sbjct: 9 PDCEFKTTDASEAVAIALLANHNLVHRNEAQPGRLPAN---TAPKGPKLDRP 57 >SB_13803| Best HMM Match : rve (HMM E-Value=8.6e-14) Length = 1447 Score = 29.9 bits (64), Expect = 2.0 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +3 Query: 525 PRCEFKDLDNSYVLKRPTADDGDCVHRGRCDNGGLPGNPCVSRKRGCGLQRP 680 P CEFK D S + + + VHR G LP N + +G L RP Sbjct: 26 PDCEFKTTDASEAVAIALLANHNLVHRNEAQPGRLPAN---TAPKGPKLDRP 74 >SB_11035| Best HMM Match : Retrotrans_gag (HMM E-Value=0.095) Length = 222 Score = 29.9 bits (64), Expect = 2.0 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +3 Query: 525 PRCEFKDLDNSYVLKRPTADDGDCVHRGRCDNGGLPGNPCVSRKRGCGLQRP 680 P CEFK D S + + + VHR G LP N + +G L RP Sbjct: 9 PDCEFKTTDASEAVAIALLANHNLVHRNEAQPGRLPAN---TAPKGPKLDRP 57 >SB_3027| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 886 Score = 29.9 bits (64), Expect = 2.0 Identities = 22/67 (32%), Positives = 28/67 (41%) Frame = -2 Query: 670 KPHPRFRDTXGLPGRPPLSHRPRWTQSPSSAVGRFKTYELSRSLNSHRGPTYPLDTHSYK 491 KP P LP P HR RW+ S S + + EL N R ++ SY Sbjct: 102 KPCPLSPVEGDLPPELPAKHRDRWSTSFQSDLNHNSSIELENE-NGIRNE----ESQSYD 156 Query: 490 SGSPISQ 470 SPIS+ Sbjct: 157 HNSPISK 163 >SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07) Length = 1253 Score = 29.9 bits (64), Expect = 2.0 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +3 Query: 525 PRCEFKDLDNSYVLKRPTADDGDCVHRGRCDNGGLPGNPCVSRKRGCGLQRP 680 P CEFK D S + + + VHR G LP N + +G L RP Sbjct: 9 PDCEFKTTDASEAVAIALLANHNLVHRNEAQPGRLPAN---TAPKGPKLDRP 57 >SB_27735| Best HMM Match : Retrotrans_gag (HMM E-Value=0.097) Length = 812 Score = 29.9 bits (64), Expect = 2.0 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +3 Query: 525 PRCEFKDLDNSYVLKRPTADDGDCVHRGRCDNGGLPGNPCVSRKRGCGLQRP 680 P CEFK D S + + + VHR G LP N + +G L RP Sbjct: 9 PDCEFKTTDASEAVAIALLANHNLVHRNEAQPGRLPAN---TAPKGPKLDRP 57 >SB_27036| Best HMM Match : RVT_1 (HMM E-Value=0.00041) Length = 1059 Score = 29.9 bits (64), Expect = 2.0 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +3 Query: 525 PRCEFKDLDNSYVLKRPTADDGDCVHRGRCDNGGLPGNPCVSRKRGCGLQRP 680 P CEFK D S + + + VHR G LP N + +G L RP Sbjct: 9 PDCEFKTTDASEAVAIALLANHNLVHRNEAQPGRLPAN---TAPKGPKLDRP 57 >SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1167 Score = 29.9 bits (64), Expect = 2.0 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +3 Query: 525 PRCEFKDLDNSYVLKRPTADDGDCVHRGRCDNGGLPGNPCVSRKRGCGLQRP 680 P CEFK D S + + + VHR G LP N + +G L RP Sbjct: 9 PDCEFKTTDASEAVAIALLANHNLVHRNEAQPGRLPAN---TAPKGPKLDRP 57 >SB_19685| Best HMM Match : Retrotrans_gag (HMM E-Value=0.061) Length = 335 Score = 29.9 bits (64), Expect = 2.0 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +3 Query: 525 PRCEFKDLDNSYVLKRPTADDGDCVHRGRCDNGGLPGNPCVSRKRGCGLQRP 680 P CEFK D S + + + VHR G LP N + +G L RP Sbjct: 9 PDCEFKTTDASEAVAIALLANHNLVHRNEAQPGRLPAN---TAPKGPKLDRP 57 >SB_16144| Best HMM Match : DMAP_binding (HMM E-Value=9.6) Length = 161 Score = 29.9 bits (64), Expect = 2.0 Identities = 22/67 (32%), Positives = 28/67 (41%) Frame = -2 Query: 670 KPHPRFRDTXGLPGRPPLSHRPRWTQSPSSAVGRFKTYELSRSLNSHRGPTYPLDTHSYK 491 KP P LP P HR RW+ S S + + EL N R ++ SY Sbjct: 45 KPCPLSPVEGDLPPELPAKHRDRWSTSFQSDLNHNSSIELENE-NGIRNE----ESQSYD 99 Query: 490 SGSPISQ 470 SPIS+ Sbjct: 100 HNSPISK 106 >SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 6753 Score = 29.5 bits (63), Expect = 2.6 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +1 Query: 442 CLNGGVCFTVVISESPIYNCECQAGM 519 CLNGG C ++ E YNC C+ G+ Sbjct: 3587 CLNGGTC--TIVGED--YNCTCRQGL 3608 Score = 28.3 bits (60), Expect = 6.1 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = +1 Query: 442 CLNGGVCFTVVISESPIYNCECQAGMWARGASSR 543 CLNGG CF + Y C+C G + +S+ Sbjct: 1876 CLNGGSCFNM----DGEYRCKCAKGFCGKNCNSK 1905 >SB_45116| Best HMM Match : EGF (HMM E-Value=0) Length = 2023 Score = 29.5 bits (63), Expect = 2.6 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = +1 Query: 442 CLNGGVCFTVVISESPIYNCECQAG 516 CLNGG C +V YNC+CQ G Sbjct: 1079 CLNGGTCNDLVNG----YNCKCQPG 1099 >SB_34394| Best HMM Match : RVT_1 (HMM E-Value=8.7e-08) Length = 1201 Score = 29.5 bits (63), Expect = 2.6 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +3 Query: 525 PRCEFKDLDNSYVLKRPTADDGDCVHRGRCDNGGLPGNPCVSRKRGCGLQRP 680 P CEFK D S + + + VHR G LP N + +G L RP Sbjct: 9 PDCEFKTTDASEAVAIALLANHNLVHRNEAHPGRLPAN---TAPKGPKLDRP 57 >SB_42855| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 809 Score = 28.7 bits (61), Expect = 4.6 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -3 Query: 495 INRALRYHNGEADSTIKTVVLRVLGL 418 + R L+YH E+DSTI + +V GL Sbjct: 347 VERRLKYHLDESDSTINDLYSKVTGL 372 >SB_20112| Best HMM Match : EGF (HMM E-Value=0) Length = 2112 Score = 28.7 bits (61), Expect = 4.6 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +1 Query: 442 CLNGGVCFTVVISESPIYNCECQAGMWAR 528 CLN G C TV YNC C+ G++ + Sbjct: 998 CLNSGTCRTV----HNTYNCSCRPGVYGK 1022 >SB_14964| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1149 Score = 28.7 bits (61), Expect = 4.6 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = +3 Query: 525 PRCEFKDLDNSYVLKRPTADDGDCVHRGRCDNGGLPGN 638 P CEFK D S + + + VHR G LP N Sbjct: 9 PDCEFKTTDASEAVAIALLANHNLVHRNEAQPGRLPAN 46 >SB_9507| Best HMM Match : Cadherin (HMM E-Value=0) Length = 2735 Score = 28.7 bits (61), Expect = 4.6 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Frame = +1 Query: 442 CLNGGVCFTVVIS-ESPIYNCECQAGMWARGASSRTWTTRMF*NGRQLMMETASIAGGAT 618 CLNGG C V + +NC+C + R R ++E I G + Sbjct: 2178 CLNGGTCLEGVDELGNNRFNCKCPSVYQGRTCDVRRAVVAAKPGS---VLEDGLIIGLSI 2234 Query: 619 MAVFLAIXVCL 651 + VFL + +C+ Sbjct: 2235 LLVFLVVAICI 2245 >SB_32123| Best HMM Match : Keratin_B2 (HMM E-Value=0.019) Length = 1097 Score = 28.7 bits (61), Expect = 4.6 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Frame = -1 Query: 674 LQAAPTLPRHTXIARKTAIVAPPAMDAV-SIISCRPFQNIRVVQVLELAPR 525 +Q + P HT + +T P D V +SCRP V+Q L PR Sbjct: 367 IQTSSYRPCHTDLVIQTLSYRPCHTDLVMQTLSCRPCHADLVIQTLSYRPR 417 >SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1409 Score = 28.3 bits (60), Expect = 6.1 Identities = 16/55 (29%), Positives = 25/55 (45%) Frame = +1 Query: 442 CLNGGVCFTVVISESPIYNCECQAGMWARGASSRTWTTRMF*NGRQLMMETASIA 606 C NGGVC +E Y+C C+AG + +M + M++T +A Sbjct: 48 CKNGGVCK----NEHGGYSCACKAGFTGKNCEQAYTRAKMAEYAKTNMVDTLVLA 98 Score = 27.9 bits (59), Expect = 8.0 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +1 Query: 424 EYSQYYCLNGGVCFTVVISESPIYNCECQA 513 E S+Y C NGGVC +E Y+C C+A Sbjct: 1005 ECSKYPCQNGGVC----KNEHGGYSCACKA 1030 >SB_31904| Best HMM Match : Extensin_2 (HMM E-Value=0.5) Length = 398 Score = 27.9 bits (59), Expect = 8.0 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 8/74 (10%) Frame = -2 Query: 664 HPRFRDTXGLPGRPPLSHRP--RWTQSPSSAVGRF----KTYELSRSLN-SHRGPTY-PL 509 HP + LP +PPL +P T+ +G K++ + R + S+ P+Y P Sbjct: 194 HPTVNNKPYLPVKPPLPVKPDVSSTKRSQPKIGSSALLPKSFGVPRDRSPSNEKPSYGPT 253 Query: 508 DTHSYKSGSPISQR 467 + SY SG P +R Sbjct: 254 NGWSYTSGKPTQER 267 >SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) Length = 765 Score = 27.9 bits (59), Expect = 8.0 Identities = 19/56 (33%), Positives = 27/56 (48%) Frame = -2 Query: 625 PPLSHRPRWTQSPSSAVGRFKTYELSRSLNSHRGPTYPLDTHSYKSGSPISQR*SR 458 P S P+ ++SP S+ K Y SRS HR + S +S SP +R S+ Sbjct: 251 PQKSRSPQRSRSPRSS----KRYRSSRSHRKHRSHSRSRSPRSKRSRSPRKRRRSK 302 >SB_9918| Best HMM Match : Ribosomal_S30 (HMM E-Value=1.6) Length = 158 Score = 27.9 bits (59), Expect = 8.0 Identities = 17/52 (32%), Positives = 22/52 (42%) Frame = +3 Query: 525 PRCEFKDLDNSYVLKRPTADDGDCVHRGRCDNGGLPGNPCVSRKRGCGLQRP 680 P CEFK S + + + VHR G LP N + +G L RP Sbjct: 9 PDCEFKTTGASEAVAIALLANHNLVHRNEAQTGRLPAN---TAPKGPKLDRP 57 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,719,442 Number of Sequences: 59808 Number of extensions: 393104 Number of successful extensions: 1342 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 1197 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1341 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1757375282 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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