Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060664.seq
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    31   0.58 
AF000265-9|AAB52943.2|  449|Caenorhabditis elegans Hypothetical ...    30   1.8  
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    28   5.4  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    28   5.4  
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
           homolog protein 1 protein.
          Length = 1722

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 415 CEPEYSQYYCLNGGVCFTVVISESPIYNCECQAG 516
           C    S+  CLNGG C   V  E+ ++ CEC  G
Sbjct: 18  CNRACSRNTCLNGGTC--TVNDETRMFQCECPKG 49


>AF000265-9|AAB52943.2|  449|Caenorhabditis elegans Hypothetical
           protein C18E3.2 protein.
          Length = 449

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 661 PRFRDTXGLPGRPPLSHRPRWTQSPSSAVGRFKTY 557
           P+ R   G  G+PP  H PR    P++ + + K Y
Sbjct: 23  PQMRRPGGFAGQPPQMHGPRMVAPPAAPLPKKKKY 57


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
 Frame = -2

Query: 634  PGRPPLSHR-PRWTQSPSSAVGRFKTYELSRSLNSHRGPTYPLDTHSYKSGSP 479
            P  P  S   P +T SPS   G    Y  +    S   PTY   + SY   SP
Sbjct: 1794 PSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTYSPASPSYSPSSP 1846


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
 Frame = -2

Query: 634  PGRPPLSHR-PRWTQSPSSAVGRFKTYELSRSLNSHRGPTYPLDTHSYKSGSP 479
            P  P  S   P +T SPS   G    Y  +    S   PTY   + SY   SP
Sbjct: 1801 PSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTYSPASPSYSPSSP 1853


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
            F55H12.3 protein.
          Length = 2972

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
 Frame = +1

Query: 442  CLNGGVCF-------TVVISESPIYNCECQAGMWARGASSR 543
            C NGG C        T V  ES  YNC CQ G +     SR
Sbjct: 1771 CFNGGTCSIFNYNTTTKVSIES--YNCTCQTGYFGTNCESR 1809


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,040,674
Number of Sequences: 27780
Number of extensions: 273758
Number of successful extensions: 783
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)