Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060664.seq
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id...    30   1.2  
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id...    30   1.2  
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id...    30   1.2  
At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ...    28   5.0  
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ...    28   5.0  
At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative        28   6.6  
At1g51920.1 68414.m05853 expressed protein                             27   8.7  

>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
           identical to splicing factor RSZ33 [Arabidopsis
           thaliana] GI:9843663; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00098: Zinc knuckle
          Length = 249

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 673 CKPHPRFRDTXGLPGRPPLSHR-PRWTQSPSSAVGRFKTYELSRS 542
           CK  P+     G   R P+  R PR  +SPS ++ R ++Y  SRS
Sbjct: 95  CKNSPKKLRRSGSYSRSPVRSRSPRRRRSPSRSLSRSRSYSRSRS 139


>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
           identical to splicing factor RSZ33 [Arabidopsis
           thaliana] GI:9843663; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00098: Zinc knuckle
          Length = 260

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 673 CKPHPRFRDTXGLPGRPPLSHR-PRWTQSPSSAVGRFKTYELSRS 542
           CK  P+     G   R P+  R PR  +SPS ++ R ++Y  SRS
Sbjct: 106 CKNSPKKLRRSGSYSRSPVRSRSPRRRRSPSRSLSRSRSYSRSRS 150


>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
           identical to splicing factor RSZ33 [Arabidopsis
           thaliana] GI:9843663; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00098: Zinc knuckle
          Length = 290

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 673 CKPHPRFRDTXGLPGRPPLSHR-PRWTQSPSSAVGRFKTYELSRS 542
           CK  P+     G   R P+  R PR  +SPS ++ R ++Y  SRS
Sbjct: 136 CKNSPKKLRRSGSYSRSPVRSRSPRRRRSPSRSLSRSRSYSRSRS 180


>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
           nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
           cDNA provides a truncated ORF likely due to a skipped
           exon. An alternative ORF is provided.
          Length = 383

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 667 PHPRFRDTXGLPGRPPLSHRPRW 599
           P P F    G P RPP +H P W
Sbjct: 65  PRPGFDSFTGPPVRPPQNHYPPW 87


>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
           nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
           cDNA provides a truncated ORF likely due to a skipped
           exon. An alternative ORF is provided.
          Length = 661

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 667 PHPRFRDTXGLPGRPPLSHRPRW 599
           P P F    G P RPP +H P W
Sbjct: 65  PRPGFDSFTGPPVRPPQNHYPPW 87


>At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative
          Length = 746

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 439 YCLNGGVCFTVVISESPIYNCE 504
           YC   GVC T+VIS  P Y+CE
Sbjct: 322 YC---GVCETMVISRYPEYSCE 340


>At1g51920.1 68414.m05853 expressed protein
          Length = 78

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 129 IPVRNSNXVMSSPFGFLISHRPMSKSCTYRERRPSGSCGKC 251
           +P+  SN     P   + S RP+  +C   E  P GSC +C
Sbjct: 23  LPLSQSNATRI-PRAPISSRRPICPACVCCEPAPLGSCCRC 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,209,899
Number of Sequences: 28952
Number of extensions: 248470
Number of successful extensions: 636
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)