BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV060664.seq (680 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 30 1.2 At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 30 1.2 At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 30 1.2 At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ... 28 5.0 At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ... 28 5.0 At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative 28 6.6 At1g51920.1 68414.m05853 expressed protein 27 8.7 >At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly identical to splicing factor RSZ33 [Arabidopsis thaliana] GI:9843663; contains Pfam profiles PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), PF00098: Zinc knuckle Length = 249 Score = 30.3 bits (65), Expect = 1.2 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = -2 Query: 673 CKPHPRFRDTXGLPGRPPLSHR-PRWTQSPSSAVGRFKTYELSRS 542 CK P+ G R P+ R PR +SPS ++ R ++Y SRS Sbjct: 95 CKNSPKKLRRSGSYSRSPVRSRSPRRRRSPSRSLSRSRSYSRSRS 139 >At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly identical to splicing factor RSZ33 [Arabidopsis thaliana] GI:9843663; contains Pfam profiles PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), PF00098: Zinc knuckle Length = 260 Score = 30.3 bits (65), Expect = 1.2 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = -2 Query: 673 CKPHPRFRDTXGLPGRPPLSHR-PRWTQSPSSAVGRFKTYELSRS 542 CK P+ G R P+ R PR +SPS ++ R ++Y SRS Sbjct: 106 CKNSPKKLRRSGSYSRSPVRSRSPRRRRSPSRSLSRSRSYSRSRS 150 >At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly identical to splicing factor RSZ33 [Arabidopsis thaliana] GI:9843663; contains Pfam profiles PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), PF00098: Zinc knuckle Length = 290 Score = 30.3 bits (65), Expect = 1.2 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = -2 Query: 673 CKPHPRFRDTXGLPGRPPLSHR-PRWTQSPSSAVGRFKTYELSRS 542 CK P+ G R P+ R PR +SPS ++ R ++Y SRS Sbjct: 136 CKNSPKKLRRSGSYSRSPVRSRSPRRRRSPSRSLSRSRSYSRSRS 180 >At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to nuclear protein ZAP, Mus musculus, EMBL:AB033168 this cDNA provides a truncated ORF likely due to a skipped exon. An alternative ORF is provided. Length = 383 Score = 28.3 bits (60), Expect = 5.0 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = -2 Query: 667 PHPRFRDTXGLPGRPPLSHRPRW 599 P P F G P RPP +H P W Sbjct: 65 PRPGFDSFTGPPVRPPQNHYPPW 87 >At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to nuclear protein ZAP, Mus musculus, EMBL:AB033168 this cDNA provides a truncated ORF likely due to a skipped exon. An alternative ORF is provided. Length = 661 Score = 28.3 bits (60), Expect = 5.0 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = -2 Query: 667 PHPRFRDTXGLPGRPPLSHRPRW 599 P P F G P RPP +H P W Sbjct: 65 PRPGFDSFTGPPVRPPQNHYPPW 87 >At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative Length = 746 Score = 27.9 bits (59), Expect = 6.6 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = +1 Query: 439 YCLNGGVCFTVVISESPIYNCE 504 YC GVC T+VIS P Y+CE Sbjct: 322 YC---GVCETMVISRYPEYSCE 340 >At1g51920.1 68414.m05853 expressed protein Length = 78 Score = 27.5 bits (58), Expect = 8.7 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = +3 Query: 129 IPVRNSNXVMSSPFGFLISHRPMSKSCTYRERRPSGSCGKC 251 +P+ SN P + S RP+ +C E P GSC +C Sbjct: 23 LPLSQSNATRI-PRAPISSRRPICPACVCCEPAPLGSCCRC 62 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,209,899 Number of Sequences: 28952 Number of extensions: 248470 Number of successful extensions: 636 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 618 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 636 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1438152744 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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