Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060663.seq
         (687 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    26   0.33 

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 71  LKCMICDKFLTGQAEAQKHAKETMH 145
           LKCM C +     AE   H ++T H
Sbjct: 479 LKCMWCGQSFRSLAEMTSHMQQTQH 503



 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +2

Query: 62  KFTLKCMICDKFLTGQAEAQKHAKETMH 145
           K  LKC+ C +     A    H KE  H
Sbjct: 375 KNVLKCVWCKQSFPSLAAMTTHMKEAKH 402



 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/25 (28%), Positives = 11/25 (44%)
 Frame = +2

Query: 71  LKCMICDKFLTGQAEAQKHAKETMH 145
           L C +CD+  +   E   H  +  H
Sbjct: 548 LTCKVCDQAFSSLKELSNHMVKNSH 572


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,103
Number of Sequences: 336
Number of extensions: 2948
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)