Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060663.seq
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc...    48   2e-06
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    31   0.12 
SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   5.9  

>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 21/50 (42%), Positives = 29/50 (58%)
 Frame = +2

Query: 11  EQLAHEAKSSRQFTDLNKFTLKCMICDKFLTGQAEAQKHAKETMHTNFGE 160
           +QLA   K+   +TD   F+++C IC   L G+ +A  HA  T HT FGE
Sbjct: 279 QQLASLLKNMHYYTDTASFSIRCTICGTGLVGEKDATAHALATGHTQFGE 328


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 71  LKCMICDKFLTGQAEAQKHAKETMHTNFGE 160
           LKC+ CDK L+    A+ H+ +T H  F E
Sbjct: 3   LKCLECDKLLSSIEMAEFHSTKTSHDQFEE 32


>SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 100

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 458 LK*NILYCCLKMYVTFHFF*HLKHKQRNVQSNHAESK 348
           +K N  Y      V+FH F     KQRN   +HA +K
Sbjct: 20  MKMNDSYTPYTYIVSFHNFVRFPIKQRNTSIHHAPNK 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,955
Number of Sequences: 5004
Number of extensions: 47076
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)