Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060663.seq
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0484 + 3471527-3471591,3471679-3471724,3472468-3472576,347...    46   2e-05
02_03_0351 + 18030656-18030823,18030963-18031113,18031214-180313...    32   0.49 

>02_01_0484 +
           3471527-3471591,3471679-3471724,3472468-3472576,
           3473023-3473114,3473196-3473258,3473346-3473464,
           3473752-3473827,3473925-3473981
          Length = 208

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 20/45 (44%), Positives = 27/45 (60%)
 Frame = +2

Query: 26  EAKSSRQFTDLNKFTLKCMICDKFLTGQAEAQKHAKETMHTNFGE 160
           + K  R +TD   FTL+C +C   + GQ EA +HA+ T H NF E
Sbjct: 162 DEKRKRSYTDTANFTLRCGVCQIGVIGQKEAVEHAQATGHVNFQE 206


>02_03_0351 +
           18030656-18030823,18030963-18031113,18031214-18031309,
           18032027-18032103,18032627-18032706,18033216-18033276,
           18034153-18034220,18034312-18034393,18034552-18034638,
           18035009-18035086,18035336-18035455,18035554-18035730
          Length = 414

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 68  TLKCMICDKFLTGQAEAQKHAKETMHTNFGE 160
           +L+C  C   L    EAQ HA+ T H NF E
Sbjct: 5   SLRCGDCGVLLRSVEEAQAHAEATNHANFSE 35



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = +2

Query: 11  EQLAH-EAKSSRQFTDLNKFTLK--CMICDKFLTGQAEAQKHAKETMHTNF 154
           E  AH EA +   F++  +  L   C  C K    Q E   H K T HT F
Sbjct: 20  EAQAHAEATNHANFSESTEAVLNLVCAACGKPCRSQTEVDLHTKRTGHTEF 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,885,443
Number of Sequences: 37544
Number of extensions: 278569
Number of successful extensions: 508
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)