Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060663.seq
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    23   3.6  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   4.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   6.3  

>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
 Frame = -3

Query: 229 NQNNNNIMKYRNSFVLRVNYSLDLP---EVSVHC 137
           N  NNN   Y       +NY   +P    V V+C
Sbjct: 95  NNYNNNYNNYNKKLYYNINYIEQIPVPVPVPVYC 128


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 123 NTLKRQCTLTSGRSSE*FTRSTNELRYFIILLLFWLHNTRVRIYRFEMYFKNR 281
           N +KR+ + +  R S   T      R  ++LL++W H     I  FE+   NR
Sbjct: 39  NNIKRKRSWSRPRESAQTTSKAGIHRKKVLLLVWWDHK---GIVYFELLPPNR 88


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 229 NQNNNNIMKYRNSFV 185
           N NNNN  KY++ ++
Sbjct: 136 NTNNNNTNKYKDYYI 150


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +2

Query: 35  SSRQFTDLNKFTLKCMICDKFLTGQAEAQKHAKETMHTNFGE 160
           S    T++ + T +C++C K    +   Q H +   H   GE
Sbjct: 50  SETPLTNIEEKTYQCLLCQKAFDQKNLYQSHLRS--HGKEGE 89


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 117 RRNTLKRQCTLTSGRSS 167
           +R TLK+ C L SG +S
Sbjct: 342 QRGTLKKGCLLVSGIAS 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,892
Number of Sequences: 438
Number of extensions: 3765
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)