Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060663.seq
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50670.1 68414.m05698 OTU-like cysteine protease family prote...    46   2e-05
At1g04850.1 68414.m00481 ubiquitin-associated (UBA)/TS-N domain-...    34   0.077
At3g62670.1 68416.m07040 two-component responsive regulator fami...    29   3.8  
At1g78040.1 68414.m09094 pollen Ole e 1 allergen and extensin fa...    28   5.0  
At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) simi...    28   6.7  

>At1g50670.1 68414.m05698 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 208

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 21/53 (39%), Positives = 29/53 (54%)
 Frame = +2

Query: 2   GTREQLAHEAKSSRQFTDLNKFTLKCMICDKFLTGQAEAQKHAKETMHTNFGE 160
           G    L  + +  R +TD   FTL+C +C   + GQ EA +HA+ T H NF E
Sbjct: 154 GLALNLVKDQQRKRSYTDTANFTLRCGVCQIGVIGQKEAVEHAQATGHVNFQE 206


>At1g04850.1 68414.m00481 ubiquitin-associated (UBA)/TS-N
           domain-containing protein weak similarity to SP|P45974
           Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)
           {Homo sapiens}; contains Pfam profile PF00627: UBA/TS-N
           domain
          Length = 413

 Score = 34.3 bits (75), Expect = 0.077
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 68  TLKCMICDKFLTGQAEAQKHAKETMHTNFGE 160
           +LKC  C   L    EAQ+HA+ T H+NF E
Sbjct: 5   SLKCGDCGTLLKSVEEAQEHAELTSHSNFAE 35


>At3g62670.1 68416.m07040 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver domain
          Length = 426

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 636 STLHSFDQSVLKQRWRHPPSSAVHKTRAITEILVINSN 523
           STL+S    + KQ  RH PSSA+  +     +++ NSN
Sbjct: 369 STLNSISAMLTKQESRHVPSSAMENSE---PLMIYNSN 403


>At1g78040.1 68414.m09094 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 171

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +1

Query: 154 RGGLANSSLVVQ--TSCDIS*YYYCFGYITPVSAYIVLKCILRTAVKGR 294
           RG +  +++VVQ  T CDI      FG+ TP S+Y +    ++ + K R
Sbjct: 22  RGNIGKNTMVVQGSTYCDIC----KFGFETPESSYFIPGATVKLSCKDR 66


>At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) similar
           to ribosomal protein L22 GI:710294 from [Rattus
           norvegicus]
          Length = 127

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 7/43 (16%)
 Frame = -3

Query: 304 NHKSALSRRFLKYISKRYMR-------TRVLCNQNNNNIMKYR 197
           N  S  S+R+LKY++K+Y++        RV+ +  + N+ + R
Sbjct: 71  NANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVR 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,954,980
Number of Sequences: 28952
Number of extensions: 234458
Number of successful extensions: 437
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)