Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060661.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    28   1.1  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.4  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    27   2.5  
SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    26   4.4  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   4.4  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.4  
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    25   7.7  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    25   7.7  

>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 18  SPEEEERANRRQEKTRSYALRRSSHEDRVNAILKPSLFSSNQSQHPFRDS 167
           SP E++  N +Q  + S     S H D VN  ++P L  SN+++   R +
Sbjct: 179 SPIEKD-VNPQQNISDSSIKNNSIHSDEVNPEVRPDLTPSNENEESKRSA 227


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 6   RVKTSPEEEERANRRQEKTRSYALRRSSHEDRVN-AILKPSLFSSNQSQHPFRDS 167
           R +   EE ERA+RR++  R   LRR    D  N  ++ P+ F      HP  D+
Sbjct: 103 RKRFEDEERERAHRREKAARK-LLRRILVSDSPNMQLVVPNNFQQMFIHHPVVDT 156


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +1

Query: 10  SRPLQKKRREPIDDKKRLAPTPCAGQATRTV*TPY*SLRYFPRTNPSTRSATATAAILEP 189
           SR     RR+P+ D +  +P+P A  + +    P    R F       +S+T+T  I  P
Sbjct: 566 SRNTSLARRKPLPDTESHSPSPSATSSIKK--NPSSIFRRFSSRRKQNKSSTSTLQISAP 623


>SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 555 DEEGTSLFAVAVHEFG 602
           DE GT+L  VAVH FG
Sbjct: 64  DEHGTALGCVAVHPFG 79


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -3

Query: 410 ETRISASSEFTSVKVSREACSQTSRARANTLRVSYGSSREGRRVDDKHLCIPTATAQVSA 231
           ET+ S SS  T    S    S T  +  ++   S GSS++   +D     I T+T Q + 
Sbjct: 255 ETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTT 314

Query: 230 TT 225
           ++
Sbjct: 315 SS 316


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 486 WRGPRW*RHFDDDELWLLEPKDDDEEGTSLFAVAV 590
           WRG R+   F +DE+ L E K   +E  SLF   V
Sbjct: 99  WRGCRYILDFSEDEMHLDESKIVLDERYSLFLTNV 133


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 126 LFSSNQSQHPFRDSHCGNTRATTF 197
           L S + SQ  F++ H GN   TTF
Sbjct: 174 LSSLDSSQDSFQEEHPGNVTGTTF 197


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 24  EEEERANRRQEKTRSYALRRSSHEDRVNAILKPSLFSSNQSQ 149
           E +E+ N  +EK     L      D V    + ++FS  QS+
Sbjct: 163 ESDEKQNAYEEKIEERILANPDESDDVMLAARDAIFSKGQSK 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,904,530
Number of Sequences: 5004
Number of extensions: 61650
Number of successful extensions: 182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)