Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060661.seq
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0697 - 30999644-31000762 51 7e-07
10_08_0900 - 21436508-21437521 48 5e-06
06_01_0940 + 7235801-7236916 44 1e-04
10_08_0901 - 21443224-21444085,21444804-21444998,21445189-214452... 36 0.030
05_05_0322 + 24094831-24094992,24095147-24095216,24096184-240963... 33 0.28
01_01_0763 + 5898719-5899021,5899124-5899518,5899619-5899703,589... 30 1.5
07_03_1554 + 27659995-27660093,27661084-27661120,27661204-276612... 29 3.4
07_01_0426 + 3239274-3239386,3239472-3239702,3242516-3242642,324... 29 3.4
05_01_0469 - 3725117-3725170,3725282-3725356,3726938-3727015,372... 29 4.5
10_01_0171 + 1917520-1918056,1919201-1919336,1921873-1922060,192... 28 7.9
09_01_0011 + 291315-292277 28 7.9
07_01_0468 + 3537669-3537890,3539003-3539130,3539398-3539621,353... 28 7.9
05_04_0416 - 21088217-21088705 28 7.9
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 28 7.9
>02_05_0697 - 30999644-31000762
Length = 372
Score = 51.2 bits (117), Expect = 7e-07
Identities = 29/64 (45%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 298 LDPYETRSVLARALDVWEQASRLTFTEVNS-EEADILVSFAKRYHDDAYPFDGRGTILAH 474
+D +V ARA W A+RL FTEV+S ADI + F H D FDG LAH
Sbjct: 179 IDRATLSAVFARAFSRWAAATRLQFTEVSSASNADITIGFYSGDHGDGEAFDGPLGTLAH 238
Query: 475 AFFP 486
AF P
Sbjct: 239 AFSP 242
Score = 36.3 bits (80), Expect = 0.023
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +3
Query: 510 HFDDDELWLL--EPKDDDEEGTS--LFAVAVHEFGHSLGLSHSSV 632
H D E W+ + GT+ L +VAVHE GH LGL HSSV
Sbjct: 248 HLDAAEAWVASGDVSTSSSFGTAVDLESVAVHEIGHLLGLGHSSV 292
>10_08_0900 - 21436508-21437521
Length = 337
Score = 48.4 bits (110), Expect = 5e-06
Identities = 29/73 (39%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +1
Query: 271 LSSTRRPSLLDPYETRSVLARALDVWEQASRLTFTEVNS-EEADILVSFAKRYHDDAYPF 447
+S T L P R+V RA W + + F E + E ADI V F H D PF
Sbjct: 145 VSPTATVGYLPPAAVRAVFQRAFARWARTIPVGFVETDDYEAADIKVGFYAGNHGDGVPF 204
Query: 448 DGRGTILAHAFFP 486
DG IL HAF P
Sbjct: 205 DGPLGILGHAFSP 217
Score = 35.5 bits (78), Expect = 0.040
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 510 HFDDDELWLLE-PKDDDEEGTSLFAVAVHEFGHSLGLSHSSVKR 638
H D E W ++ D L +VA HE GH LGL HS+ R
Sbjct: 223 HLDASEHWAVDFDVDATASAIDLESVATHEIGHVLGLGHSASPR 266
>06_01_0940 + 7235801-7236916
Length = 371
Score = 43.6 bits (98), Expect = 1e-04
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +1
Query: 259 IQRCLSSTRRPSLLDPYETRSVLARALDVWEQASRLTFTEVNSE-EADILVSFAKRYHDD 435
++ +++T + S+ D V A A W A+ L FTE S +ADI + F H D
Sbjct: 167 LRYAITATSQTSI-DRATLSKVFASAFARWSAATTLNFTEAASAADADITIGFYGGDHGD 225
Query: 436 AYPFDGRGTILAHAFFP 486
FDG LAHAF P
Sbjct: 226 GEAFDGPLGTLAHAFSP 242
Score = 35.1 bits (77), Expect = 0.052
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = +3
Query: 510 HFDDDELWLLE---PKDDDEEGTSLFAVAVHEFGHSLGLSHSS 629
H D E W+ + L +VAVHE GH LGL HSS
Sbjct: 248 HLDASEAWVAGGDVTRASSNAAVDLESVAVHEIGHILGLGHSS 290
>10_08_0901 -
21443224-21444085,21444804-21444998,21445189-21445259,
21446293-21447094,21447687-21447723,21448270-21449023
Length = 906
Score = 35.9 bits (79), Expect = 0.030
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 513 FDDDELWLLE-PKDDDEEGTSLFAVAVHEFGHSLGLSHSSVKRRTDVXFGYQG 668
FD E W ++ D L VA HE GH+LGL HS+ + V + Y G
Sbjct: 155 FDAAERWAVDLAADASPAAVDLETVATHEIGHALGLDHST--SESSVMYPYVG 205
Score = 34.7 bits (76), Expect = 0.069
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Frame = +1
Query: 319 SVLARALDVWEQASRLTFTEVNSE------EADILVSF-AKRYHDDAYPFDGRGTILAHA 477
+V A W + ++F E+ +E EADI V F H D +PFDG + AHA
Sbjct: 86 AVFRSAFARWAEVIPVSFAEITTEDDAAAAEADIRVGFYGAGEHGDGHPFDGPLNVYAHA 145
Query: 478 FFP 486
P
Sbjct: 146 TGP 148
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +3
Query: 573 LFAVAVHEFGHSLGLSHSS 629
L +VAVHE GH+LGL HSS
Sbjct: 800 LESVAVHEIGHALGLGHSS 818
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3
Query: 573 LFAVAVHEFGHSLGLSHSS 629
L +VA HE GH LGL HSS
Sbjct: 436 LESVAAHEIGHVLGLDHSS 454
>05_05_0322 +
24094831-24094992,24095147-24095216,24096184-24096307,
24096403-24096502,24096598-24096825,24096916-24097041,
24097092-24097376,24097490-24097648,24097751-24097929,
24098078-24098210
Length = 521
Score = 32.7 bits (71), Expect = 0.28
Identities = 20/67 (29%), Positives = 28/67 (41%)
Frame = -3
Query: 518 IKVPSPPRSTPGKKA*ARIVPRPSNGYASSW*RLANETRISASSEFTSVKVSREACSQTS 339
I V +P R P K ++VPRP N +S NE + + SE A +
Sbjct: 153 IVVQNPARKEPAPKPAKKVVPRPENAAKASTGAGVNENKKPSESEGAGSSSGGSALKYSR 212
Query: 338 RARANTL 318
+ NTL
Sbjct: 213 KKVVNTL 219
>01_01_0763 +
5898719-5899021,5899124-5899518,5899619-5899703,
5899810-5900032,5900131-5900327,5900531-5900601,
5904034-5904218,5905914-5906068,5906241-5907632,
5907973-5908269
Length = 1100
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/51 (39%), Positives = 24/51 (47%)
Frame = -3
Query: 386 EFTSVKVSREACSQTSRARANTLRVSYGSSREGRRVDDKHLCIPTATAQVS 234
+ S ++S C+ RARAN L SSR R LC P AT VS
Sbjct: 396 DIPSFRLSMWRCNDELRARANELHRK--SSRNKRPPLTASLCTPAATVSVS 444
>07_03_1554 +
27659995-27660093,27661084-27661120,27661204-27661280,
27662272-27662342,27662512-27662590,27662726-27662828,
27662963-27663082,27663180-27663257,27663416-27663471,
27663588-27663657,27664179-27664266,27664503-27664800,
27664943-27665158,27665521-27665841,27666054-27666103,
27666493-27666553,27666633-27666716,27666926-27667039,
27667134-27667300,27667559-27667628,27668328-27668507,
27668619-27668807
Length = 875
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/48 (41%), Positives = 26/48 (54%)
Frame = +3
Query: 18 SPEEEERANRRQEKTRSYALRRSSHEDRVNAILKPSLFSSNQSQHPFR 161
S EEE A +R E T++ R + E R NAIL+ SL Q+ H R
Sbjct: 583 SSGEEELAIQRLEITKNDLQIRIAKEARGNAILQASLERRKQALHERR 630
>07_01_0426 +
3239274-3239386,3239472-3239702,3242516-3242642,
3242729-3242788,3242868-3242960,3243073-3243369,
3243450-3243761,3243857-3244114,3244227-3244375,
3244470-3245102,3245367-3245640,3245736-3245777,
3246332-3246586,3246700-3246711
Length = 951
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -2
Query: 174 RSGCRGTGAGIGSR 133
R GCRGTGAG G R
Sbjct: 86 RGGCRGTGAGAGGR 99
>05_01_0469 -
3725117-3725170,3725282-3725356,3726938-3727015,
3727091-3727183,3727582-3727696,3728028-3728158,
3728243-3728512,3728983-3729120
Length = 317
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 395 PISLSRSPNVTMTMHIHSMDEVRF*LTLSFLAWTAVVTAL 514
PI+LS+ + HI ++ EV F +T + AW A++ L
Sbjct: 12 PINLSQLLSKLSQWHILTIFEVLFSITTGYFAWLAMIAHL 51
>10_01_0171 +
1917520-1918056,1919201-1919336,1921873-1922060,
1922491-1922694,1923913-1924425
Length = 525
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/40 (32%), Positives = 16/40 (40%)
Frame = -2
Query: 180 YCRSGCRGTGAGIGSRKITKASVWRSHGPRGLTGAGRRSE 61
Y S TG G G R ++WR +G T A E
Sbjct: 90 YYTSSASSTGGGRGQRAWAMVAIWRPPADKGGTAAADEDE 129
>09_01_0011 + 291315-292277
Length = 320
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/73 (27%), Positives = 32/73 (43%)
Frame = +3
Query: 3 ARVKTSPEEEERANRRQEKTRSYALRRSSHEDRVNAILKPSLFSSNQSQHPFRDSHCGNT 182
AR K PEEE ++ Q KTR ++S + +V +L + +P N
Sbjct: 51 ARTKKPPEEEAAGSQPQPKTRPSPASKAS-KAKVLLLLGDGEPKKKPAPNPTPTQKRSNK 109
Query: 183 RATTFQRVRSLKI 221
R ++ R L+I
Sbjct: 110 RKRSWSRADELRI 122
>07_01_0468 +
3537669-3537890,3539003-3539130,3539398-3539621,
3539660-3540062,3540398-3540473
Length = 350
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +3
Query: 462 DSSSRFLSWRGPR----W*RHFDDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLGLSHSS 629
D+++R RGP W R D+DEL +D E V VHE G +G+ H+
Sbjct: 141 DAAARAELGRGPGARNGWERAIDEDELLDALDGEDLERAHEQALVLVHEAG-GIGVGHAD 199
Query: 630 VK 635
K
Sbjct: 200 GK 201
>05_04_0416 - 21088217-21088705
Length = 162
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -2
Query: 168 GCRGTGAGIGSRKITKASVWRSHGPRGLTGAGRRSESFLVVD 43
G R AG G R++ + WR G G G G R E+ L D
Sbjct: 61 GWRLAAAGKGGRRVPRTR-WRRRGHGGGGGGGWRGETRLEAD 101
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 24 EEEERANRRQEKTRSYALRRSSHEDRVNAILKPSLFSSNQSQHPFR 161
+E N+R + +RS L + + D V +LKPS N S+ F+
Sbjct: 833 DESVDKNKRTKDSRSMKLFKVAIADFVKEVLKPSWRQGNISREAFK 878
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,510,004
Number of Sequences: 37544
Number of extensions: 488325
Number of successful extensions: 1594
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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