Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060658.seq
         (497 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    79   2e-15
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799...    29   1.6  
07_03_1738 - 29141829-29141989,29142112-29142343,29142751-291427...    27   6.3  
03_02_0817 + 11492699-11492774,11493605-11493978                       27   6.3  
01_01_1223 + 9886709-9886784,9887566-9887935,9888028-9888097           27   6.3  
01_01_1156 - 9194477-9194485,9194801-9195156,9197783-9197858           27   6.3  
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    27   8.4  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 36/64 (56%), Positives = 49/64 (76%)
 Frame = +3

Query: 63  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 242
           +S +E+AC  +ALIL DD + +T EKI+T++KAA + VE YWPGLFAK LE  +V DLI 
Sbjct: 1   MSSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLIL 60

Query: 243 NIGS 254
           ++GS
Sbjct: 61  SVGS 64


>02_02_0220 -
           7992124-7992351,7992458-7992562,7993499-7993711,
           7993937-7994196,7994425-7994701,7995226-7995371,
           7995519-7995903,7996680-7996964
          Length = 632

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +3

Query: 27  GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKIST 149
           G+R+LA+     V+K +     S  +L+ +DVA+TG+ ++T
Sbjct: 249 GIRKLAQIFQSSVAKKKAVGKKSKALLLGEDVAITGDCVTT 289


>07_03_1738 -
           29141829-29141989,29142112-29142343,29142751-29142792,
           29143312-29143410,29143575-29143667,29143742-29143876,
           29144251-29144290,29144475-29144844,29146575-29146650
          Length = 415

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -1

Query: 266 QHPLRADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQD 150
           Q+P  A++ D + ++DA  G G   +P +L + +R+ +D
Sbjct: 42  QNPTEAELQDMINEVDA-DGNGTIDFPEFLNLMARKMKD 79


>03_02_0817 + 11492699-11492774,11493605-11493978
          Length = 149

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -1

Query: 266 QHPLRADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQD 150
           Q+P  A++ D + ++DA  G G   +P +L + +R+ +D
Sbjct: 42  QNPTEAELQDMINEVDA-DGNGTIDFPEFLNLMARKMKD 79


>01_01_1223 + 9886709-9886784,9887566-9887935,9888028-9888097
          Length = 171

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -1

Query: 266 QHPLRADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQD 150
           Q+P  A++ D + ++DA  G G   +P +L + +R+ +D
Sbjct: 42  QNPTEAELQDMINEVDA-DGNGTIDFPEFLNLMARKMKD 79


>01_01_1156 - 9194477-9194485,9194801-9195156,9197783-9197858
          Length = 146

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -1

Query: 266 QHPLRADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQD 150
           Q+P  A++ D + ++DA  G G   +P +L + +R+ +D
Sbjct: 42  QNPTEAELQDMINEVDA-DGNGTIDFPEFLNLMARKMKD 79


>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 135 HQLRQHHHPPG*EQSKH 85
           HQ R+HHHPP  +   H
Sbjct: 562 HQRRRHHHPPAWDVEGH 578


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,478,399
Number of Sequences: 37544
Number of extensions: 189299
Number of successful extensions: 528
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)