Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060658.seq
         (497 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              97   7e-21
SB_43135| Best HMM Match : CMAS (HMM E-Value=0)                        36   0.014
SB_12363| Best HMM Match : Lig_chan (HMM E-Value=2.5e-34)              29   1.6  
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)                      27   8.6  
SB_36414| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 97.1 bits (231), Expect = 7e-21
 Identities = 43/65 (66%), Positives = 55/65 (84%)
 Frame = +3

Query: 60  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 239
           M S +ELACVYSALIL DDDVA+T +KI T++KAA ++VEP+WPGLFAKAL+G N+ DLI
Sbjct: 1   MASTSELACVYSALILHDDDVAITADKIETLVKAAKINVEPFWPGLFAKALQGHNIADLI 60

Query: 240 TNIGS 254
            + G+
Sbjct: 61  LSAGA 65



 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 362 SDDDMGFGLFD 394
           SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110


>SB_43135| Best HMM Match : CMAS (HMM E-Value=0)
          Length = 254

 Score = 36.3 bits (80), Expect = 0.014
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -1

Query: 239 DQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSYGNIIIHQDESR 93
           DQ+  I+ F+  G++ WP +  + S R + GG+ +      II  DESR
Sbjct: 102 DQIVSIEMFEAVGQENWPTYFQMLSERLKQGGSAVLQ----IICIDESR 146


>SB_12363| Best HMM Match : Lig_chan (HMM E-Value=2.5e-34)
          Length = 960

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = +3

Query: 27  GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAK 206
           G+R++   +L +     ++ VY +L  +D ++ V GE  +    + AV     W      
Sbjct: 726 GVRKVKSGELDVFISDHISLVYESLNDLDCELKVVGEPFAMSGASLAVKKGSPWFNALND 785

Query: 207 ALEGINVRDLITNIGSEWV 263
            L+ +  +DL   I   WV
Sbjct: 786 VLQQLKSKDLTDFIQKFWV 804


>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2371

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 257  LRADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSY 126
            L+ D+G +VT +      G  T   W+ +YS    D G+F T Y
Sbjct: 2097 LQVDLG-RVTRVTGIATQGSPTGDKWVKLYSVEQSDDGHFFTEY 2139


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 362 SDDDMGFGLFD 394
           SDDDMGFGLFD
Sbjct: 752 SDDDMGFGLFD 762


>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
          Length = 2110

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 244  LVIRSRTLMPSKA-LANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTRMRAE*TH 83
            L++ S  + P ++ LA  PGQ G+T+T   F+      PV    S+  +    TH
Sbjct: 1763 LIVPSPAIAPVQSQLATTPGQVGNTNT--LFRPASTMVPVQPAVSNETLHPAVTH 1815


>SB_36414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -1

Query: 266 QHPLRADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQD 150
           Q+P  A++ D + ++DA  G G   +P +L + +R+ +D
Sbjct: 42  QNPTEAELQDMINEVDA-DGNGTIDFPEFLTMMARKMKD 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,654,336
Number of Sequences: 59808
Number of extensions: 189275
Number of successful extensions: 484
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)