Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060658.seq
(497 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M17886-1|AAA36471.1| 114|Homo sapiens protein ( Human acidic ri... 92 1e-18
BC007590-1|AAH07590.1| 114|Homo sapiens ribosomal protein, larg... 92 1e-18
BC003369-1|AAH03369.1| 114|Homo sapiens ribosomal protein, larg... 92 1e-18
AY303789-1|AAP68820.1| 113|Homo sapiens acidic ribosomal phosph... 92 1e-18
AB061836-1|BAB79474.1| 114|Homo sapiens ribosomal protein P1 pr... 92 1e-18
CR450339-1|CAG29335.1| 114|Homo sapiens RPLP1 protein. 91 1e-18
CR542209-1|CAG47005.1| 114|Homo sapiens RPLP1 protein. 85 1e-16
AK128281-1|BAC87365.1| 121|Homo sapiens protein ( Homo sapiens ... 29 9.0
>M17886-1|AAA36471.1| 114|Homo sapiens protein ( Human acidic
ribosomal phosphoprotein P1 mRNA, complete cds. ).
Length = 114
Score = 91.9 bits (218), Expect = 1e-18
Identities = 40/65 (61%), Positives = 53/65 (81%)
Frame = +3
Query: 60 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 239
M S +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI
Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
Query: 240 TNIGS 254
N+G+
Sbjct: 61 CNVGA 65
>BC007590-1|AAH07590.1| 114|Homo sapiens ribosomal protein, large,
P1 protein.
Length = 114
Score = 91.9 bits (218), Expect = 1e-18
Identities = 40/65 (61%), Positives = 53/65 (81%)
Frame = +3
Query: 60 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 239
M S +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI
Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
Query: 240 TNIGS 254
N+G+
Sbjct: 61 CNVGA 65
>BC003369-1|AAH03369.1| 114|Homo sapiens ribosomal protein, large,
P1 protein.
Length = 114
Score = 91.9 bits (218), Expect = 1e-18
Identities = 40/65 (61%), Positives = 53/65 (81%)
Frame = +3
Query: 60 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 239
M S +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI
Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
Query: 240 TNIGS 254
N+G+
Sbjct: 61 CNVGA 65
>AY303789-1|AAP68820.1| 113|Homo sapiens acidic ribosomal
phosphoprotein P1 protein.
Length = 113
Score = 91.9 bits (218), Expect = 1e-18
Identities = 40/65 (61%), Positives = 53/65 (81%)
Frame = +3
Query: 60 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 239
M S +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI
Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
Query: 240 TNIGS 254
N+G+
Sbjct: 61 CNVGA 65
>AB061836-1|BAB79474.1| 114|Homo sapiens ribosomal protein P1
protein.
Length = 114
Score = 91.9 bits (218), Expect = 1e-18
Identities = 40/65 (61%), Positives = 53/65 (81%)
Frame = +3
Query: 60 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 239
M S +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI
Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
Query: 240 TNIGS 254
N+G+
Sbjct: 61 CNVGA 65
>CR450339-1|CAG29335.1| 114|Homo sapiens RPLP1 protein.
Length = 114
Score = 91.5 bits (217), Expect = 1e-18
Identities = 39/65 (60%), Positives = 53/65 (81%)
Frame = +3
Query: 60 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 239
M S +ELAC+YSAL+L DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI
Sbjct: 1 MASVSELACIYSALVLHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
Query: 240 TNIGS 254
N+G+
Sbjct: 61 CNVGA 65
>CR542209-1|CAG47005.1| 114|Homo sapiens RPLP1 protein.
Length = 114
Score = 85.0 bits (201), Expect = 1e-16
Identities = 38/65 (58%), Positives = 52/65 (80%)
Frame = +3
Query: 60 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 239
M S +ELA +YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI
Sbjct: 1 MASVSELARIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
Query: 240 TNIGS 254
++G+
Sbjct: 61 CDVGA 65
>AK128281-1|BAC87365.1| 121|Homo sapiens protein ( Homo sapiens
cDNA FLJ46418 fis, clone THYMU3012907. ).
Length = 121
Score = 29.1 bits (62), Expect = 9.0
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -3
Query: 228 GH*CLPRLWRTDLANMA--LHLQPPLSRWWKFSHQLRQHHHPPG 103
GH CLP ++ LA + +H Q L W HQ HPPG
Sbjct: 5 GHCCLPGGAKSGLAGSSAPVHRQGRLRTVWAPQHQRVAPWHPPG 48
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,793,741
Number of Sequences: 237096
Number of extensions: 989657
Number of successful extensions: 1590
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1590
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -