Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060658.seq
         (497 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosom...   120   8e-28
AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p pro...   120   8e-28
AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA ...   120   8e-28
Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein ( Dros...   114   7e-26
AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein ...    29   3.5  
U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative singl...    29   4.6  
AY561850-1|AAS68533.1|  970|Drosophila melanogaster gag protein ...    28   8.1  
AJ566116-1|CAD92792.1|  970|Drosophila melanogaster gag protein ...    28   8.1  

>S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosomal
           protein rpA2 protein.
          Length = 112

 Score =  120 bits (290), Expect = 8e-28
 Identities = 57/65 (87%), Positives = 63/65 (96%)
 Frame = +3

Query: 60  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 239
           M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALEGINV+DLI
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLI 60

Query: 240 TNIGS 254
           TNIGS
Sbjct: 61  TNIGS 65



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 362 SDDDMGFGLFD 394
           SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112


>AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p
           protein.
          Length = 112

 Score =  120 bits (290), Expect = 8e-28
 Identities = 57/65 (87%), Positives = 63/65 (96%)
 Frame = +3

Query: 60  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 239
           M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALEGINV+DLI
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLI 60

Query: 240 TNIGS 254
           TNIGS
Sbjct: 61  TNIGS 65



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 362 SDDDMGFGLFD 394
           SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112


>AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA
           protein.
          Length = 112

 Score =  120 bits (290), Expect = 8e-28
 Identities = 57/65 (87%), Positives = 63/65 (96%)
 Frame = +3

Query: 60  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 239
           M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALEGINV+DLI
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLI 60

Query: 240 TNIGS 254
           TNIGS
Sbjct: 61  TNIGS 65



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 362 SDDDMGFGLFD 394
           SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112


>Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for A-type ribosomal protein
           rp21C. ).
          Length = 112

 Score =  114 bits (274), Expect = 7e-26
 Identities = 55/65 (84%), Positives = 61/65 (93%)
 Frame = +3

Query: 60  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 239
           M +KAELA VY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALE INV+DLI
Sbjct: 1   MSTKAELASVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEAINVKDLI 60

Query: 240 TNIGS 254
           TNIGS
Sbjct: 61  TNIGS 65



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 362 SDDDMGFGLFD 394
           SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112


>AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein
           protein.
          Length = 1047

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 241 VIRSRTLMPSKALANRPGQYGSTSTAAAFKMVEI 140
           +I S+ L+P+K   N P QY  T+   A K  +I
Sbjct: 255 LIASQNLVPAKTHINSPTQYNDTNATNALKTAKI 288



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 232 SRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 104
           S+  +P+K   N P QY  T+   A K  +  SP    S  T+
Sbjct: 410 SQNFIPAKTHINIPTQYNDTNATKALKTAKAASPSHTYSRQTK 452


>U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative
           single-stranded nucleicacid binding protein protein.
          Length = 1043

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 232 SRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 104
           S+  +P+K   N P QY  T+   A K  +  SP    S  T+
Sbjct: 410 SQNFIPAKTHINIPTQYNDTNATKALKTAKAASPSHTYSRQTK 452


>AY561850-1|AAS68533.1|  970|Drosophila melanogaster gag protein
           protein.
          Length = 970

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 232 SRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 104
           S+  +P+K   N P QY  T+   A K  +  SP    S  T+
Sbjct: 333 SQNFIPAKTHINIPTQYNDTNATKALKTAKPASPSHTYSRQTK 375


>AJ566116-1|CAD92792.1|  970|Drosophila melanogaster gag protein
           protein.
          Length = 970

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 232 SRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 104
           S+  +P+K   N P QY  T+   A K  +  SP    S  T+
Sbjct: 333 SQNFIPAKTHINIPTQYNDTNATKALKTAKPASPSHTYSRQTK 375


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,156,147
Number of Sequences: 53049
Number of extensions: 309809
Number of successful extensions: 908
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1763278080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)