Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060658.seq
(497 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)... 78 4e-15
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)... 78 4e-15
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative 77 5e-15
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)... 77 7e-15
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)... 77 7e-15
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C) 77 9e-15
At3g49460.1 68416.m05406 60S acidic ribosomal protein-related co... 38 0.004
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 29 1.7
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid... 28 4.0
At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI, chlor... 27 5.3
At5g21274.1 68418.m02533 calmodulin-6 (CAM6) identical to calmod... 27 5.3
At3g56800.1 68416.m06317 calmodulin-2/3/5 (CAM3) identical to ca... 27 5.3
At3g43810.1 68416.m04682 calmodulin-7 (CAM7) almost identical to... 27 5.3
At2g41110.1 68415.m05078 calmodulin-2/3/5 (CAM2) (CAL1) almost i... 27 5.3
At2g27030.3 68415.m03247 calmodulin-2/3/5 (CAM5) (TCH1) identica... 27 5.3
At2g27030.2 68415.m03246 calmodulin-2/3/5 (CAM5) (TCH1) identica... 27 5.3
At2g27030.1 68415.m03245 calmodulin-2/3/5 (CAM5) (TCH1) identica... 27 5.3
At4g16155.1 68417.m02451 dihydrolipoamide dehydrogenase 2, plast... 27 9.3
At1g29120.2 68414.m03565 expressed protein 27 9.3
At1g29120.1 68414.m03564 expressed protein 27 9.3
>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 77.8 bits (183), Expect = 4e-15
Identities = 34/65 (52%), Positives = 48/65 (73%)
Frame = +3
Query: 60 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 239
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60
Query: 240 TNIGS 254
N+G+
Sbjct: 61 MNVGA 65
>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 77.8 bits (183), Expect = 4e-15
Identities = 34/65 (52%), Positives = 48/65 (73%)
Frame = +3
Query: 60 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 239
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60
Query: 240 TNIGS 254
N+G+
Sbjct: 61 MNVGA 65
>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
Length = 111
Score = 77.4 bits (182), Expect = 5e-15
Identities = 35/64 (54%), Positives = 46/64 (71%)
Frame = +3
Query: 63 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 242
+S +ELAC Y+ALIL DD + +T E IS ++K A V+VE YWP LFAK E N+ DLI
Sbjct: 1 MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60
Query: 243 NIGS 254
N+G+
Sbjct: 61 NVGA 64
>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 77.0 bits (181), Expect = 7e-15
Identities = 34/65 (52%), Positives = 47/65 (72%)
Frame = +3
Query: 60 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 239
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60
Query: 240 TNIGS 254
N+G+
Sbjct: 61 MNVGA 65
>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 77.0 bits (181), Expect = 7e-15
Identities = 34/65 (52%), Positives = 47/65 (72%)
Frame = +3
Query: 60 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 239
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60
Query: 240 TNIGS 254
N+G+
Sbjct: 61 MNVGA 65
>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
Length = 113
Score = 76.6 bits (180), Expect = 9e-15
Identities = 34/65 (52%), Positives = 47/65 (72%)
Frame = +3
Query: 60 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 239
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60
Query: 240 TNIGS 254
N+G+
Sbjct: 61 MNVGA 65
>At3g49460.1 68416.m05406 60S acidic ribosomal protein-related
contains weak similarity to Swiss-Prot:52855 60S acidic
ribosomal protein P1 (L12) [Zea mays]
Length = 46
Score = 37.9 bits (84), Expect = 0.004
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +3
Query: 63 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGL 197
++ ELAC Y+AL+L D VT +ST++K A +++E YWP L
Sbjct: 1 MATGELACTYAALLLHDH---VT---MSTLVKTANLNIESYWPSL 39
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/84 (19%), Positives = 36/84 (42%)
Frame = +3
Query: 27 GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAK 206
G +++ K +++ ++ ++ V + V G+ + T A ++ P W +
Sbjct: 203 GPQKVKYGKDNIITAKDIIIATGSVPFVPKGIEVDGKTVITSDHALKLESVPEWIAIVGS 262
Query: 207 ALEGINVRDLITNIGSEWVLLRPL 278
G+ D+ T +GSE + L
Sbjct: 263 GYIGLEFSDVYTALGSEVTFIEAL 286
>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
[Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
Length = 324
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 211 KALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 104
+ +N P + S TAA KM +I SP+T +S R
Sbjct: 283 RGYSNNPSSFNSDFTAAMIKMGDI-SPLTGSSGEIR 317
>At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI,
chloroplast, putative / Mg-protoporphyrin IX chelatase,
putative similar to SP|P161127 from Arabidopsis
thaliana, SP|P93162 from Glycine max, SP|O22436 from
Nicotiana tabacum; non-consensus AA donor splice site at
exon 1, TG acceptor splice site at exon 2
Length = 418
Score = 27.5 bits (58), Expect = 5.3
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 57 KMVSKAELACVYSALILVDDDVAVTGEKIS---TILKAAAVDVEPYWPGLFAKALEGI 221
K+ EL+ + + + +VD + T +++ I KA V+ + PGL AKA GI
Sbjct: 158 KVQKGEELSVIETKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGI 215
>At5g21274.1 68418.m02533 calmodulin-6 (CAM6) identical to
calmodulin-6 SP:Q03509 from [Arabidopsis thaliana];
contains Pfam profile: PF00036 EF hand
Length = 149
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -1
Query: 266 QHPLRADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQD 150
Q+P A++ D + ++DA G G +P +L + +R+ +D
Sbjct: 42 QNPTEAELQDMINEVDA-DGNGTIDFPEFLNLMARKMKD 79
>At3g56800.1 68416.m06317 calmodulin-2/3/5 (CAM3) identical to
calmodulin GI:474183 from [Arabidopsis thaliana]; almost
identical to calmodulin-2/3/5 SP:P25069 [Arabidopsis
thaliana]
Length = 149
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -1
Query: 266 QHPLRADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQD 150
Q+P A++ D + ++DA G G +P +L + +R+ +D
Sbjct: 42 QNPTEAELQDMINEVDA-DGNGTIDFPEFLNLMARKMKD 79
>At3g43810.1 68416.m04682 calmodulin-7 (CAM7) almost identical to
calmodulin GI:16227 from [Arabidopsis thaliana],
SP|P59220 Calmodulin-7 {Arabidopsis thaliana}
Length = 149
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -1
Query: 266 QHPLRADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQD 150
Q+P A++ D + ++DA G G +P +L + +R+ +D
Sbjct: 42 QNPTEAELQDMINEVDA-DGNGTIDFPEFLNLMARKMKD 79
>At2g41110.1 68415.m05078 calmodulin-2/3/5 (CAM2) (CAL1) almost
identical to Calmodulin-2/3/5 SP:P25069 from
[Arabidopsis thaliana]
Length = 149
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -1
Query: 266 QHPLRADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQD 150
Q+P A++ D + ++DA G G +P +L + +R+ +D
Sbjct: 42 QNPTEAELQDMINEVDA-DGNGTIDFPEFLNLMARKMKD 79
>At2g27030.3 68415.m03247 calmodulin-2/3/5 (CAM5) (TCH1) identical
to calmodulin GI:474183 from [Arabidopsis thaliana],
SP|P25069 Calmodulin-2/3/5 {Arabidopsis thaliana}
Length = 181
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -1
Query: 266 QHPLRADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQD 150
Q+P A++ D + ++DA G G +P +L + +R+ +D
Sbjct: 42 QNPTEAELQDMINEVDA-DGNGTIDFPEFLNLMARKMKD 79
>At2g27030.2 68415.m03246 calmodulin-2/3/5 (CAM5) (TCH1) identical
to calmodulin GI:474183 from [Arabidopsis thaliana],
SP|P25069 Calmodulin-2/3/5 {Arabidopsis thaliana}
Length = 113
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -1
Query: 266 QHPLRADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQD 150
Q+P A++ D + ++DA G G +P +L + +R+ +D
Sbjct: 6 QNPTEAELQDMINEVDA-DGNGTIDFPEFLNLMARKMKD 43
>At2g27030.1 68415.m03245 calmodulin-2/3/5 (CAM5) (TCH1) identical
to calmodulin GI:474183 from [Arabidopsis thaliana],
SP|P25069 Calmodulin-2/3/5 {Arabidopsis thaliana}
Length = 149
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -1
Query: 266 QHPLRADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQD 150
Q+P A++ D + ++DA G G +P +L + +R+ +D
Sbjct: 42 QNPTEAELQDMINEVDA-DGNGTIDFPEFLNLMARKMKD 79
>At4g16155.1 68417.m02451 dihydrolipoamide dehydrogenase 2,
plastidic / lipoamide dehydrogenase 2 (PTLPD2) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159284]
Length = 567
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/73 (19%), Positives = 31/73 (42%)
Frame = +3
Query: 60 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 239
+++ ++ ++ V + V G+ + T A ++ P W + G+ D+
Sbjct: 211 IITGKDIIIATGSVPFVPKGIEVDGKTVITSDHALKLESVPDWIAIVGSGYIGLEFSDVY 270
Query: 240 TNIGSEWVLLRPL 278
T +GSE + L
Sbjct: 271 TALGSEVTFIEAL 283
>At1g29120.2 68414.m03565 expressed protein
Length = 455
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 39 LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 182
LA S + S+ +A +YSA + DVAV+ S +L+ +EP
Sbjct: 176 LAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSNLLRGRIAGLEP 223
>At1g29120.1 68414.m03564 expressed protein
Length = 455
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 39 LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 182
LA S + S+ +A +YSA + DVAV+ S +L+ +EP
Sbjct: 176 LAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSNLLRGRIAGLEP 223
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,270,886
Number of Sequences: 28952
Number of extensions: 143884
Number of successful extensions: 388
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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