Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060657.seq
         (684 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   3.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.4  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    22   5.4  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   5.4  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/58 (22%), Positives = 28/58 (48%)
 Frame = +1

Query: 73  SDLNLKSKDQPEHENNDIKNSRVTPPPQFQDKQKTPYESHTKTDKNLTHDSKREKLKF 246
           S  +  S ++    NN+ K+S+ + PPQ     K  +   +  + N   ++KR++  +
Sbjct: 172 STSSTSSTEKAGTNNNNSKSSQSSNPPQIYPWMKRVHLGQSTVNAN--GETKRQRTSY 227


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 161  KTNRKPHTNPIQKPTK 208
            K   KP T+  QKPTK
Sbjct: 1156 KPGHKPSTSSWQKPTK 1171


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 280 NCTSAKFKSLLGTLIFHVSNRVLSF 206
           N T+A+F  L    I  VSN V++F
Sbjct: 305 NFTAARFFELNRRTILGVSNAVITF 329


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +3

Query: 246 PRRDLNFADVQLDLACMSTPKMLAPDEFM 332
           P+RD+  +  +  L+ +S P M  P + +
Sbjct: 9   PKRDMLDSQEKTPLSSVSYPSMFTPSQLL 37


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,942
Number of Sequences: 336
Number of extensions: 3148
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)