Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060657.seq
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 29 0.63
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 29 0.83
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c... 29 0.83
SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma... 26 4.4
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch... 26 4.4
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 26 4.4
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc... 26 5.8
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 26 5.8
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy... 25 7.7
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 7.7
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 29.1 bits (62), Expect = 0.63
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 52 ERLVATDSDLNLKSKDQPEHENNDIKNSRVTPPPQF-QDKQKTPYESHTKTDKNLTHD 222
+ L + D+D +L + P N+DI N+ PPP Q +++ E+ + D + T D
Sbjct: 190 KELYSKDNDDSLDILNVPNLVNDDIANNNAAPPPPLAQAQEQLSTENEDEFDIDDTTD 247
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 28.7 bits (61), Expect = 0.83
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 360 QSRTNLMTDFNRSRVVXNNQNEILY 434
Q +NL TD N S VV ++ N ILY
Sbjct: 690 QDMSNLSTDINASDVVADSTNSILY 714
>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 28.7 bits (61), Expect = 0.83
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +1
Query: 100 QPEHENNDIKNSRVTPPPQFQDKQKTPYESHTKTDKNLTHDSKREK 237
Q E +++ + P +F K TP ESH L H + EK
Sbjct: 165 QAEFNYDNLLRANKRPYARFAQKVSTPIESHANKSVKLEHKNSIEK 210
>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 111
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 163 DKQKTPYESHTKTDKNLTHDSKREKLKFREE 255
D Q+TPYE + + L +REK RE+
Sbjct: 29 DAQRTPYEKRMEQKRKLDEIKEREKELKREK 59
>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 26.2 bits (55), Expect = 4.4
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Frame = -3
Query: 454 WSILLSLYKISFWLFX--------TTLLRLKSVIRLVR--DWFCLPLFLPFMNSSGASIF 305
W +L+ LY+ +F +F + +L+ RL+ ++ LPL +P + S +I
Sbjct: 204 WVLLVVLYECAFGIFFGCVIGYLLSFILKHAQKYRLIDAISYYSLPLAIPLLCSGIGTII 263
Query: 304 GVD 296
GVD
Sbjct: 264 GVD 266
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 166 KQKTPYESHTKTDKNLTHDSKREKLKFR 249
K K PY+S T+T+KN D + ++ R
Sbjct: 638 KGKLPYQSETETEKNCYIDWRTGRITIR 665
>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
synthase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 447
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 118 NDIKNSRVTPPPQFQDKQKTPYESHTKTDKNLTHDSKREKLK 243
ND+ N P Q+++ + +++H K KN T E+L+
Sbjct: 387 NDLDNRHCLTPTQYEEAIELRHQAHLK--KNFTPKGSIERLR 426
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 106 EHENNDIKNSRVTPPPQF 159
EH N K++ +TPPP F
Sbjct: 419 EHSLNGTKSAPITPPPSF 436
>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 589
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 498 QHWLVTLSGLTRVNA*XRCRVXP*GAEXKGHGIRP 602
+H +T SG+T++N RC+ K H IRP
Sbjct: 220 KHHKLTTSGVTKMNITERCKPKTTIQTDKKHIIRP 254
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 160 GIEAVGLLCCF*CRYFRVQVGPSILD 83
G+E +G L YF+V++G +LD
Sbjct: 1408 GLEGLGRLLRLLTNYFKVEIGRKLLD 1433
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,573,943
Number of Sequences: 5004
Number of extensions: 51392
Number of successful extensions: 195
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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