Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060657.seq
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0100 - 20779387-20779641,20779824-20780629,20780757-207810...    31   0.64 
04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90...    28   6.0  
01_01_0658 - 5017219-5018066,5018572-5019085                           28   6.0  
08_02_0090 - 12249919-12250158,12250826-12250927,12251046-122511...    28   7.9  
07_01_0463 + 3502708-3503535                                           28   7.9  

>03_05_0100 -
           20779387-20779641,20779824-20780629,20780757-20781011,
           20781107-20781221,20781301-20781353,20781517-20781777,
           20782804-20782854,20783081-20783329,20784765-20784990,
           20785968-20786132
          Length = 811

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 520 DKVTSQCCTGSXFLSXRRSNWVWSILLSLYKISFWLFXTTLLRLKSVI 377
           D++ S+  TG    + RR+ W+  +L +   +  WLF  T+L    VI
Sbjct: 156 DELISKYNTGKPQATLRRARWMKELLETNRAVKIWLFLLTILATAMVI 203


>04_01_0083 +
           904473-905167,905247-905347,905902-905994,907322-907968
          Length = 511

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/67 (19%), Positives = 29/67 (43%)
 Frame = +1

Query: 31  MLIPHYNERLVATDSDLNLKSKDQPEHENNDIKNSRVTPPPQFQDKQKTPYESHTKTDKN 210
           +L+P  +     T +  +   + +  H +N  K  +  PPP      +TP  + + + + 
Sbjct: 6   LLLPSSSSSSSKTATATDTSDRRRHHHHHNHTKRKKKPPPPPLSPTPRTPPPAGSGSHRA 65

Query: 211 LTHDSKR 231
           +   SK+
Sbjct: 66  MAASSKK 72


>01_01_0658 - 5017219-5018066,5018572-5019085
          Length = 453

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 370 VRDWFCLPLFLPFMNSSGASIFGVDM-HAKSNCTSAKFKSLLGTLIFHV 227
           V+  + L LF        A  F  +M H    CTS +F+S L  L+FH+
Sbjct: 348 VKPEYLLQLFAGISEVKLAPRFSCEMTHCLMLCTSNQFRSCLRRLLFHL 396


>08_02_0090 -
           12249919-12250158,12250826-12250927,12251046-12251135,
           12251227-12251421
          Length = 208

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 124 IKNSRVTPPPQFQDKQKTPYESHTKTDKNLTHDSKR 231
           I  S  TPPPQ       P  S   T +N T++S R
Sbjct: 68  INGSASTPPPQINLAALFPSHSSPTTQQNTTNNSSR 103


>07_01_0463 + 3502708-3503535
          Length = 275

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +1

Query: 34  LIPHYNERLVATDSDLNLKSKDQPEHENNDIKNSRVTPPPQFQDKQKTPYESHTKTDKNL 213
           ++P   E+    +  L +KSKD+   + ++ K   +    +  DK++   +S       +
Sbjct: 15  MVPMEEEKKSKEEIHLKIKSKDKSSGDEDEKKEIEIEVKAKIVDKEEVKLDSDDGAKSAV 74

Query: 214 -THDSKREK 237
            + DSK++K
Sbjct: 75  KSKDSKKDK 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,020,799
Number of Sequences: 37544
Number of extensions: 333475
Number of successful extensions: 861
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)