Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060657.seq
(684 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.66
SB_13020| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.66
SB_45858| Best HMM Match : Chromadorea_ALT (HMM E-Value=2.9) 31 0.87
SB_51904| Best HMM Match : CH (HMM E-Value=0.0058) 31 0.87
SB_57083| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_52107| Best HMM Match : DUF833 (HMM E-Value=1.6e-09) 30 1.5
SB_33335| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_9752| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016) 28 6.1
SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2) 28 8.1
SB_31513| Best HMM Match : Transgly_assoc (HMM E-Value=0.49) 28 8.1
SB_11449| Best HMM Match : RtcR (HMM E-Value=1.9) 28 8.1
SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_56701| Best HMM Match : E-MAP-115 (HMM E-Value=0.63) 28 8.1
SB_47723| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_4148| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1888
Score = 31.5 bits (68), Expect = 0.66
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +1
Query: 67 TDSDLNLKSKDQPEHENNDIKNSRVTPPPQFQDKQKTPYESHTKTDKNLTHDS 225
T SD N S + +NN N+ T T +++ T TD N T D+
Sbjct: 197 TTSDNNTTSYNDTTSDNNKTSNNNTTSDNDTTSDNDTTFDNDTTTDNNKTTDN 249
>SB_13020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 722
Score = 31.5 bits (68), Expect = 0.66
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Frame = -3
Query: 301 VDMHAKSNCTSAKFK----SLLGTLIFHVSNRVLSFCRFLYGIRMG--FSVCLGIE 152
+D +K NC +++ K SLLG L+FH +R S F+YG+ +G SV G+E
Sbjct: 567 LDKDSKFNCKTSERKKQAQSLLGRLLFHKKSRYQS---FVYGLNIGEPDSVFSGLE 619
>SB_45858| Best HMM Match : Chromadorea_ALT (HMM E-Value=2.9)
Length = 291
Score = 31.1 bits (67), Expect = 0.87
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 333 NGRNSGRQNQSRTNLMTDFNRS-RVVXNNQNEILYRERSIDQTQLE 467
NGR S R + + T F+ + ++ +N+N+I + +DQ +LE
Sbjct: 56 NGRKSARDEHCESAVQTHFDIACEIIRDNKNQISALHKELDQVRLE 101
>SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)
Length = 1187
Score = 31.1 bits (67), Expect = 0.87
Identities = 26/83 (31%), Positives = 41/83 (49%)
Frame = +1
Query: 1 RHEVGYPEVEMLIPHYNERLVATDSDLNLKSKDQPEHENNDIKNSRVTPPPQFQDKQKTP 180
+ E+G EVEML+ Y+E L + D + N + Q + ++ K R + + K+K
Sbjct: 892 KEELG-EEVEMLVSDYDEILRSVDDERN---RVQRLLDEDEAKRKRQREEEEAKRKKKMD 947
Query: 181 YESHTKTDKNLTHDSKREKLKFR 249
E K + D+KR KLK R
Sbjct: 948 EEKAKKKELAAWEDAKR-KLKPR 969
>SB_57083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +3
Query: 168 TENPIRIPYKNR-QKLNTRFET*KIKVPRRDL 260
TENP P + KLNT+F+T KIK+ +DL
Sbjct: 77 TENPKHKPLMSAIDKLNTKFKTDKIKLANQDL 108
>SB_52107| Best HMM Match : DUF833 (HMM E-Value=1.6e-09)
Length = 624
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/48 (25%), Positives = 28/48 (58%)
Frame = +3
Query: 339 RNSGRQNQSRTNLMTDFNRSRVVXNNQNEILYRERSIDQTQLERLXER 482
RNS QNQ L+ +++++++ QN+ L E+ ++++ + E+
Sbjct: 360 RNSREQNQLLARLIAEYDKNKIELGEQNKKLSEEKQRLESRISSIEEK 407
>SB_33335| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +3
Query: 54 KTCGHRQRPKSKIEGPT*TRK*RHQ----KQQSNPTASIPRQTENPIRIPYKNRQKLNTR 221
KTC RQ+ ++G +Q ++ +N + + TEN + Y+NRQ+ N +
Sbjct: 194 KTCNCRQKNACPLDGNCLQSSVIYQATVTRKDNNTSETYVGLTENEFKTRYRNRQQQNMQ 253
Query: 222 FET*KIKVP 248
+T K +VP
Sbjct: 254 LQT-KERVP 261
>SB_9752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +3
Query: 309 MLAPDEFMNGRNSGRQNQSRTNLMTDFNRS-----RVVXNNQNEILYRERSIDQTQLER 470
M + +F N N+ ++ S TN +T RS RV+ N+N +YRE Q Q +R
Sbjct: 1 MASKGQFENTSNTEQETVSTTNPVTKKRRSHGTVARVLRENENAAVYRESGRWQLQHKR 59
>SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 424
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +1
Query: 70 DSDLNL-KSKDQPEHENNDIKNSRVTP----PPQFQDKQKTPYESHTKTDKN 210
D+D + KS + +HE +D + + TP PP+ K+K + TKT+++
Sbjct: 342 DADSTIGKSAKKRKHEKSDEEETAATPEVESPPKKHKKEKKSKKEKTKTEES 393
>SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1280
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 88 KSKDQPEHENNDIKNSRVTPP-PQFQDKQKTPYESHTKTDKNLTHDSKREKLKFREE 255
+ KD+PE E +D K+ T F+D+ ++ ES ++ T K+E + EE
Sbjct: 1085 QDKDEPEREEHDKKSDEDTDSLNPFEDEFESTLESERMGLQDTTEYVKQELVALEEE 1141
>SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016)
Length = 419
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 127 KNSRVTPPPQFQDKQKTPYESHTKTDK 207
K S TPPP+ DKQ P S +++K
Sbjct: 358 KQSSPTPPPRQSDKQSPPIPSRGQSNK 384
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 127 KNSRVTPPPQFQDKQKTPYESHTKTDK 207
K S TPPP+ DKQ P S +++K
Sbjct: 384 KQSSPTPPPRQSDKQSPPIPSRGQSNK 410
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 127 KNSRVTPPPQFQDKQKTPYESHTKTDK 207
K S TPPP+ DKQ P S +++K
Sbjct: 332 KQSSPTPPPRQSDKQSPPTPSRGQSNK 358
>SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
Length = 300
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 238 IFHVSNRVLSFCRFLYGIRMGFSVCLGIEAVGLLCCF*CRY 116
+ +V + +CR Y + S+C ++ V +L C CRY
Sbjct: 8 VIYVDMLLCRYCR--YAVMSILSICCYVDIVDMLLCRYCRY 46
>SB_31513| Best HMM Match : Transgly_assoc (HMM E-Value=0.49)
Length = 340
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = +3
Query: 273 VQLDLACMSTPKMLAPDEFMNGRNSGRQNQSRTNLMTDFNRSRVVXNNQNEILYRERSID 452
+QLD +T L +E N + N+ R+ T+ R R + E+ R ID
Sbjct: 158 IQLD-ELDATANTLREEEERNTEQMRKNNEERSET-TNQERLRAIDRKNEELSERNSVID 215
Query: 453 QTQLERLXERK 485
+T E ER+
Sbjct: 216 ETLEENQLERE 226
>SB_11449| Best HMM Match : RtcR (HMM E-Value=1.9)
Length = 335
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = +3
Query: 273 VQLDLACMSTPKMLAPDEFMNGRNSGRQNQSRTNLMTDFNRSRVVXNNQNEILYRERSID 452
+QLD +T L +E N + N+ R+ T+ R R + E+ R ID
Sbjct: 241 IQLD-ELDATANTLREEEERNTEQMRKNNEERSET-TNQERLRAIDRKNEELSERNSVID 298
Query: 453 QTQLERLXERK 485
+T E ER+
Sbjct: 299 ETLEENQLERE 309
>SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1822
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = -3
Query: 331 MNSSGASIFGVDMHAKSNCTSAKFKSLLGTLIFHVSNRVLSFCRFL 194
+N S + I G + NCT AK + + + +SF +F+
Sbjct: 1661 VNGSNSEIPGTRRKGRVNCTQAKGRQTESACVLGQAQNTISFAKFI 1706
>SB_56701| Best HMM Match : E-MAP-115 (HMM E-Value=0.63)
Length = 936
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = +3
Query: 273 VQLDLACMSTPKMLAPDEFMNGRNSGRQNQSRTNLMTDFNRSRVVXNNQNEILYRERSID 452
+QLD +T L +E N + N+ R+ T+ R R + E+ R ID
Sbjct: 796 IQLD-ELDATANTLREEEERNTEQMRKNNEERSET-TNQERLRAIDRKNEELSERNSVID 853
Query: 453 QTQLERLXERK 485
+T E ER+
Sbjct: 854 ETLEENQLERE 864
>SB_47723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 91 SKDQPEHENNDIKNSRVTPPPQFQDKQKTPYESHTKT 201
S+D+ +DI + TPPP+ ++ PY SH T
Sbjct: 8 SEDEVSSIASDISSLPDTPPPEDSRCKRIPYRSHIIT 44
>SB_4148| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 333 NGRNSGRQNQSRTNLMTDFNRSRVVXNNQN-EILY 434
N RN+ N +R+N D N + NN N ++Y
Sbjct: 108 NNRNNSSNNNNRSNRNNDSNNINISRNNSNSRVIY 142
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,721,661
Number of Sequences: 59808
Number of extensions: 400149
Number of successful extensions: 1228
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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