Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060657.seq
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81057-3|CAB02916.1|  168|Caenorhabditis elegans Hypothetical pr...    36   0.027
AL023856-6|CAC15864.1|  332|Caenorhabditis elegans Hypothetical ...    31   0.77 
Z70284-20|CAA94286.2|  543|Caenorhabditis elegans Hypothetical p...    31   1.0  
Z70271-8|CAA94238.2|  543|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AF040643-2|AAB94961.1|  471|Caenorhabditis elegans Hypothetical ...    29   2.3  
AC006712-8|AAU20838.1|  450|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z81585-2|CAB04682.2|  303|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z27081-3|CAH19085.1|  869|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z47356-5|CAA87418.1|  173|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U41278-4|AAK31513.3|  928|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U20861-17|AAA62289.1|  146|Caenorhabditis elegans Hypothetical p...    28   5.4  
AF016418-3|AAK18905.1|  210|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z81484-9|CAE11297.1|  325|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U32305-8|AAK18853.4|  492|Caenorhabditis elegans Regulator of g ...    27   9.4  
U12965-3|AAZ32811.1|  980|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z81057-3|CAB02916.1|  168|Caenorhabditis elegans Hypothetical
           protein F10D11.4 protein.
          Length = 168

 Score = 35.9 bits (79), Expect = 0.027
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = +1

Query: 85  LKSKDQPEHENNDIKNSRVTPPPQFQDKQKTPYESHTKTDKNLTHDSKREKLKFREE 255
           +K +D+P++    IKN ++    Q ++  KT  ESH    +    +S+R+K K  +E
Sbjct: 104 VKKEDKPDNNEPLIKNLKIAKKEQEEENPKTDLESHDDEVETKKKESRRQKKKKSKE 160


>AL023856-6|CAC15864.1|  332|Caenorhabditis elegans Hypothetical
           protein Y94A7B.9 protein.
          Length = 332

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 22/92 (23%), Positives = 40/92 (43%)
 Frame = -3

Query: 493 GSXFLSXRRSNWVWSILLSLYKISFWLFXTTLLRLKSVIRLVRDWFCLPLFLPFMNSSGA 314
           G   +  R + ++ S+  SL+ +  W F   +    S+   ++ +FC P F  F      
Sbjct: 30  GGYCILYRTTVFMKSVKWSLFNLYLWSFALDI----SLSLFIQPYFCSPAFAGFPLGIVQ 85

Query: 313 SIFGVDMHAKSNCTSAKFKSLLGTLIFHVSNR 218
            + G+ M     C +A FK +  ++I    NR
Sbjct: 86  WVKGIPMDVLVVCATAIFKVVPVSIISMFENR 117


>Z70284-20|CAA94286.2|  543|Caenorhabditis elegans Hypothetical
           protein W08D2.8 protein.
          Length = 543

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 11/119 (9%)
 Frame = +3

Query: 162 RQTENPIRIPYKNRQKLNTRFET*KIKVPRRDLNFADVQLDLACMSTPKM---------L 314
           +++E+P +I   +  +L    +    K+P   +NF +V+  LA +   K          +
Sbjct: 390 KESEHPHKIEDGDPSELKEIVDACCAKIPSVRINFREVKNRLAMLQQKKKTLELDAQKPM 449

Query: 315 APDEFMNGRNSG--RQNQSRTNLMTDFNRSRVVXNNQNEILYRERSIDQTQLERLXERK 485
           +P+  +  + S   R N  R N     + +     N N  L R++S D  + +R  ERK
Sbjct: 450 SPNPAIEKKKSEDRRNNMDRRNKTNRKSHTSTDRTNSNNTLTRKKSRDAGKNDRSNERK 508


>Z70271-8|CAA94238.2|  543|Caenorhabditis elegans Hypothetical
           protein W08D2.8 protein.
          Length = 543

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 11/119 (9%)
 Frame = +3

Query: 162 RQTENPIRIPYKNRQKLNTRFET*KIKVPRRDLNFADVQLDLACMSTPKM---------L 314
           +++E+P +I   +  +L    +    K+P   +NF +V+  LA +   K          +
Sbjct: 390 KESEHPHKIEDGDPSELKEIVDACCAKIPSVRINFREVKNRLAMLQQKKKTLELDAQKPM 449

Query: 315 APDEFMNGRNSG--RQNQSRTNLMTDFNRSRVVXNNQNEILYRERSIDQTQLERLXERK 485
           +P+  +  + S   R N  R N     + +     N N  L R++S D  + +R  ERK
Sbjct: 450 SPNPAIEKKKSEDRRNNMDRRNKTNRKSHTSTDRTNSNNTLTRKKSRDAGKNDRSNERK 508


>AF040643-2|AAB94961.1|  471|Caenorhabditis elegans Hypothetical
           protein F14D2.7 protein.
          Length = 471

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
 Frame = +3

Query: 321 DEFMNGRNSGRQNQSRTNLMTDFNRSRVVXNNQNEILYRERSIDQ----TQLERLXERKX 488
           D+  + +++   N +  +L  ++N  +   NN+ E  Y E SIDQ       ++    K 
Sbjct: 396 DQAEHAKDTNNNNNNNEHLHDEYNIIQTEDNNEEEKHYTEYSIDQDFECIDDDKHYSGKH 455

Query: 489 EPVQHWLVTLSGLTR 533
            PV++ +V    L R
Sbjct: 456 SPVENMIVNFILLER 470


>AC006712-8|AAU20838.1|  450|Caenorhabditis elegans Hypothetical
           protein Y119C1B.3 protein.
          Length = 450

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +1

Query: 31  MLIPHYNERLVATDSDLNLKSKDQP--EHENNDIKNSRVTPPPQFQDKQKTPYESHTKTD 204
           +L+  Y   ++  D  +N K  D    EH  + +K+SR        D   +PY  H   +
Sbjct: 304 ILLQTYRSIIIINDRYINPKPPDMDIIEHNMDLMKSSRTNDIDD--DYPSSPYSHHKTHN 361

Query: 205 KNLTHDSKREK 237
           K+    SK+EK
Sbjct: 362 KHYEKMSKKEK 372


>Z81585-2|CAB04682.2|  303|Caenorhabditis elegans Hypothetical
           protein T05E12.2 protein.
          Length = 303

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -1

Query: 315 LAFSGSTCTLNLIVHQQNSNLFSEL*FFTFRIVC*VFVGFCMGFVWGFLFV 163
           +A SG TC +N+ + ++  N   EL  F FR +  V  G  +     F+ V
Sbjct: 22  VASSGFTCLMNIFLLKKVGNQKKELVLFNFRFILDVMFGAMVTIYLTFVVV 72


>Z27081-3|CAH19085.1|  869|Caenorhabditis elegans Hypothetical
           protein M01A8.2b protein.
          Length = 869

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
 Frame = +1

Query: 67  TDSDLNLKSKDQPEHENNDIKNSRVT----PPPQFQDKQKTPYESHTKTDKNLTHDSKRE 234
           T SD +   K Q   E   +K         PPP+F  KQK P   H    + L    + E
Sbjct: 260 TKSDKSPTKKSQKMEEKPVVKKKEEPAAPPPPPKFPVKQKAP-SKHQLMMEQLKASIEAE 318

Query: 235 KLKFREEI 258
           K K ++EI
Sbjct: 319 KTKPKKEI 326


>Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical
           protein M01A8.2a protein.
          Length = 937

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
 Frame = +1

Query: 67  TDSDLNLKSKDQPEHENNDIKNSRVT----PPPQFQDKQKTPYESHTKTDKNLTHDSKRE 234
           T SD +   K Q   E   +K         PPP+F  KQK P   H    + L    + E
Sbjct: 328 TKSDKSPTKKSQKMEEKPVVKKKEEPAAPPPPPKFPVKQKAP-SKHQLMMEQLKASIEAE 386

Query: 235 KLKFREEI 258
           K K ++EI
Sbjct: 387 KTKPKKEI 394


>Z47356-5|CAA87418.1|  173|Caenorhabditis elegans Hypothetical
           protein T15H9.5 protein.
          Length = 173

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 70  DSDLNLKSKDQPEHENND--IKNSRVTPPPQFQDKQKTPYESHTKTDKNLTHDSKREK 237
           D  +    K + + +NN+  +KN ++    Q ++  KT  ESH    +    +S+R+K
Sbjct: 94  DEKVEKDVKKEVKADNNEPLVKNLKIAKKEQEEENPKTDLESHKDEAEAKKKESRRQK 151


>U41278-4|AAK31513.3|  928|Caenorhabditis elegans Hypothetical
           protein F33G12.5 protein.
          Length = 928

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 61  VATDSDLNLKSKDQPEHENNDIKNSRVTPPPQFQDKQKTPYESHTKTDKN 210
           V  D+ L    + +  H N+D +    TPPP   + Q +P  S    DK+
Sbjct: 833 VLVDAKLEEVPEREKVHGNSDDEKIPSTPPPTVLEAQNSPRLSDCSADKD 882


>U20861-17|AAA62289.1|  146|Caenorhabditis elegans Hypothetical
           protein C28H8.1 protein.
          Length = 146

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 76  DLNLKSKDQPEHENNDIKNSRVTPPPQFQDKQKTPYES--HTKTDKNLTHD 222
           +++ +S   P  EN+    S   PPPQF   + + + +  H  +D N T +
Sbjct: 69  EVDEESNQVPSAENSQDSTSVTQPPPQFDINEDSNFSTGDHFDSDSNQTFE 119


>AF016418-3|AAK18905.1|  210|Caenorhabditis elegans Hypothetical
           protein C49G7.10 protein.
          Length = 210

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 88  KSKDQPE-HENNDIKNSRVTPPPQFQDKQKTPYESHTKTDKNLTH 219
           KS  +PE ++N  +    +TPP  ++ K + P      +D+NLTH
Sbjct: 116 KSAKKPELYQNAKVAYHIITPPKNYE-KLQAPKFCPGSSDRNLTH 159


>Z81484-9|CAE11297.1|  325|Caenorhabditis elegans Hypothetical
           protein C47A10.10 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = -3

Query: 454 WSILLSLYKISFWLFXTTLLRLKSVIRLVRDWFCLPLF---LPFMNSSGASIFGVDMHAK 284
           W++  S+ +I   +   T    KS +R +     +PLF   +PFM +    +F  D+   
Sbjct: 213 WNMNKSISEIKSMVSKNTFRMHKSFVRSLNFQVAIPLFIVCIPFMVNVFIPMFSTDLQGT 272

Query: 283 SNCTSAKFKSLLGTL 239
           +N       S+ G L
Sbjct: 273 TNLICIIIISMHGVL 287


>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical protein
            M03A8.2 protein.
          Length = 2275

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 30/84 (35%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
 Frame = +1

Query: 19   PEVEMLIPHYNERLVATDSDLNLKSKDQPEHENNDIKNSRVTPPPQFQD--KQKTPYES- 189
            PE   L   YN RLV   +DL L     P   NN   NS V P   FQ+    K   ES 
Sbjct: 904  PEKNFLEILYN-RLV---NDLALFQPAAPAFRNNQSTNSNVQPLESFQECVSPKNYAESE 959

Query: 190  HTKTDKNL-THDSKREKLKFREEI 258
            H+  D ++ T     E L F  +I
Sbjct: 960  HSDLDDDVATLHESIESLNFDRDI 983


>U32305-8|AAK18853.4|  492|Caenorhabditis elegans Regulator of g
           protein signalingprotein 5 protein.
          Length = 492

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 522 PIRSQANVARAPXSSRRDVLTGFGRYSSLYTRSRS 418
           P  S+ +  R P SSR   +   GRY +LY  S S
Sbjct: 400 PSSSKRSTPRTPRSSRLAEVDEMGRYHALYDDSHS 434


>U12965-3|AAZ32811.1|  980|Caenorhabditis elegans Hypothetical
           protein F23F12.8 protein.
          Length = 980

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 297 STPKMLAPDEFMNGRNSGRQNQSRTNLMTDFNRSR 401
           +TPK++      N  N+ R  +SRT L+ + NR R
Sbjct: 173 TTPKIVIFASKKNMNNTNRSGESRTQLIRNRNRER 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,313,540
Number of Sequences: 27780
Number of extensions: 290737
Number of successful extensions: 1055
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)