Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060657.seq
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   1.6  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   2.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   2.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.6  

>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
 Frame = +1

Query: 28  EMLIPHYNERLVATDS------DLNLKSKDQPEHENNDIKNSRVTPP 150
           E   P + + ++ATD       D  +  +  P HE  D K+S  TPP
Sbjct: 192 ETRTPGFGKDVLATDERSFSEHDSVMLGEISPHHEYYDSKSSTETPP 238


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 435 RERSIDQTQLERLXERK 485
           +ERS D+T+ ER  ERK
Sbjct: 297 KERSRDRTERERSKERK 313


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 435 RERSIDQTQLERLXERK 485
           +ERS D+T+ ER  ERK
Sbjct: 302 KERSRDKTERERSKERK 318


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 103 PEHENNDIKNSRVTPP 150
           P HE  D K+S  TPP
Sbjct: 525 PHHEYYDSKSSTETPP 540


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,609
Number of Sequences: 438
Number of extensions: 4043
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)