Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060657.seq
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44600.1 68415.m05552 expressed protein                             33   0.18 
At1g60050.1 68414.m06765 nodulin-related low similarity to MtN21...    29   2.2  
At4g18610.1 68417.m02756 expressed protein contains Pfam profile...    29   3.8  
At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa...    28   6.6  
At1g09320.1 68414.m01043 agenet domain-containing protein contai...    28   6.6  
At1g18150.2 68414.m02253 mitogen-activated protein kinase, putat...    27   8.8  
At1g18150.1 68414.m02252 mitogen-activated protein kinase, putat...    27   8.8  

>At2g44600.1 68415.m05552 expressed protein
          Length = 313

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +1

Query: 106 EHENNDIKNSRVTPPPQFQDKQKTPYESHTKTD 204
           E+++ND ++SR++PPP    +  +PY +  K+D
Sbjct: 36  ENDDNDHRHSRISPPPLLFPRSVSPYVAPRKSD 68


>At1g60050.1 68414.m06765 nodulin-related low similarity to MtN21
           [Medicago truncatula] GI:2598575; contains Pfam profile
           PF00892: Integral membrane protein
          Length = 374

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = -3

Query: 511 TSQCCTGSXFLSXRRSNWVWSILLSLYKISFWLFXTTLLRLKSVIRL--VRDWFCLPLFL 338
           T QC   S F+    S W   + + LY I       +++R    ++   ++  + +PLF 
Sbjct: 237 TLQCAIFSAFMEPDLSAWELKLNMDLYLIIATGIFGSIIRTSVQVKCSKMKGPYYVPLFK 296

Query: 337 PFMNSSGASIFGVDMHAKS 281
           PF     ASIFG      S
Sbjct: 297 PF-GILWASIFGTSFFVNS 314


>At4g18610.1 68417.m02756 expressed protein contains Pfam profile
           PF04852: Protein of unknown function (DUF640)
          Length = 191

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 73  SDLNLKSKDQPEHENNDIKNSRVTPPPQFQDKQKTPYESHTKTDKN 210
           SD +  +KD P+H ++   + +   PPQ Q +  + YES  + D N
Sbjct: 3   SDRHTPTKDPPDHPSSSSNHHKQPLPPQPQ-QPLSRYESQKRRDWN 47


>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 997

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 109 HENNDIKNSRVTPPPQFQDKQKTPYESHTKTDKNLTHDS 225
           HE  D    R  PP +   KQ   +E+H   DKN +H S
Sbjct: 792 HETKDNGAIREAPPVKVNQKQNGTHENH-GGDKNGSHSS 829


>At1g09320.1 68414.m01043 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 517

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 82  NLKSKDQPEHENNDIKNSRVTPPPQFQDKQKTPYESHTKTD 204
           NLK++D  E    ++  SR+ P P  +    +P+E H K +
Sbjct: 419 NLKAEDGKEPLREEVNVSRIRPLP-LESVMVSPFERHDKVN 458


>At1g18150.2 68414.m02253 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK8) identical to ATMPK8 [Arabidopsis
           thaliana] gi|7106542|dbj|BAA92222; mitogen-activated
           protein kinase (MAPK), PMID:12119167; similar to
           mitogen-activated protein kinase GI:5815410 from (Oryza
           sativa)
          Length = 589

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 297 STPKMLAPDEFMNGRNSGRQ--NQSRTNLMTDFNRSRVVXNNQNEILYRE 440
           S    LA   F    NS R+   Q  + L  DF R ++V ++  E++YRE
Sbjct: 385 SAEDALADPYFSGLSNSEREPTTQPISKLEFDFERKKLVKDDVRELIYRE 434


>At1g18150.1 68414.m02252 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK8) identical to ATMPK8 [Arabidopsis
           thaliana] gi|7106542|dbj|BAA92222; mitogen-activated
           protein kinase (MAPK), PMID:12119167; similar to
           mitogen-activated protein kinase GI:5815410 from (Oryza
           sativa)
          Length = 589

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 297 STPKMLAPDEFMNGRNSGRQ--NQSRTNLMTDFNRSRVVXNNQNEILYRE 440
           S    LA   F    NS R+   Q  + L  DF R ++V ++  E++YRE
Sbjct: 385 SAEDALADPYFSGLSNSEREPTTQPISKLEFDFERKKLVKDDVRELIYRE 434


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,659,394
Number of Sequences: 28952
Number of extensions: 275378
Number of successful extensions: 863
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)