Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060656.seq
(688 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ829922-1|CAH25640.1| 193|Tribolium castaneum twist bHLH trans... 23 1.8
AY695257-1|AAW21974.1| 224|Tribolium castaneum intermediate neu... 23 3.1
X06905-1|CAA30009.1| 489|Tribolium castaneum protein ( Triboliu... 22 5.4
U04271-2|AAA03709.1| 490|Tribolium castaneum alpha-amylase II p... 22 5.4
U04271-1|AAA03708.1| 490|Tribolium castaneum alpha-amylase I pr... 22 5.4
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr... 22 5.4
S73225-1|AAB30811.1| 327|Tribolium castaneum protein ( Triboliu... 21 7.2
AJ005083-1|CAB65469.1| 585|Tribolium castaneum signal receptor ... 21 7.2
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 21 9.5
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 21 9.5
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 21 9.5
>AJ829922-1|CAH25640.1| 193|Tribolium castaneum twist bHLH
transcription factor protein.
Length = 193
Score = 23.4 bits (48), Expect = 1.8
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +2
Query: 509 SYQPSRCTRQRAPQSYGEAEH 571
S+Q +R++APQS+ + +H
Sbjct: 76 SFQGKHKSRRKAPQSFEDIQH 96
>AY695257-1|AAW21974.1| 224|Tribolium castaneum intermediate
neuroblasts defectiveprotein protein.
Length = 224
Score = 22.6 bits (46), Expect = 3.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 344 THLEIPRRELSQPPKRSPSSTK 279
TH + P R ++ PPKR S K
Sbjct: 60 THHKAPIRPVALPPKREIPSPK 81
>X06905-1|CAA30009.1| 489|Tribolium castaneum protein ( Tribolium
castaneum mRNAfor alhpa amylase 3'region. ).
Length = 489
Score = 21.8 bits (44), Expect = 5.4
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = -3
Query: 308 PPKRSPSSTKSVRVWWRR 255
PP + T S R WW R
Sbjct: 60 PPNENLVVTSSNRPWWER 77
>U04271-2|AAA03709.1| 490|Tribolium castaneum alpha-amylase II
protein.
Length = 490
Score = 21.8 bits (44), Expect = 5.4
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = -3
Query: 308 PPKRSPSSTKSVRVWWRR 255
PP + T S R WW R
Sbjct: 61 PPNENLVVTSSNRPWWER 78
>U04271-1|AAA03708.1| 490|Tribolium castaneum alpha-amylase I
protein.
Length = 490
Score = 21.8 bits (44), Expect = 5.4
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = -3
Query: 308 PPKRSPSSTKSVRVWWRR 255
PP + T S R WW R
Sbjct: 61 PPNENLVVTSSNRPWWER 78
>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
protein protein.
Length = 1156
Score = 21.8 bits (44), Expect = 5.4
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 604 QEAGEPFRGEPTSYANGADKEDKEK 678
+EA + E + ++NGA +ED++K
Sbjct: 886 REAEDRDEDERSFHSNGAKEEDEDK 910
>S73225-1|AAB30811.1| 327|Tribolium castaneum protein ( Tribolium
castaneum homeodomainprotein mRNA, complete cds. ).
Length = 327
Score = 21.4 bits (43), Expect = 7.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 338 LEIPRRELSQPPKRSPSSTKS 276
L+ R+ S P SPSSTKS
Sbjct: 60 LDPGRKSPSSPRISSPSSTKS 80
>AJ005083-1|CAB65469.1| 585|Tribolium castaneum signal receptor
protein protein.
Length = 585
Score = 21.4 bits (43), Expect = 7.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -2
Query: 585 SRASVCSASP*LWGALCR 532
+R ++C +SP L GA C+
Sbjct: 60 NRINLCDSSPCLNGATCQ 77
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 21.0 bits (42), Expect = 9.5
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -2
Query: 27 HGGRCLLVP 1
HGG CL VP
Sbjct: 112 HGGSCLYVP 120
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 21.0 bits (42), Expect = 9.5
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -2
Query: 27 HGGRCLLVP 1
HGG CL VP
Sbjct: 112 HGGSCLYVP 120
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 21.0 bits (42), Expect = 9.5
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -2
Query: 27 HGGRCLLVP 1
HGG CL VP
Sbjct: 112 HGGSCLYVP 120
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,070
Number of Sequences: 336
Number of extensions: 3157
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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