Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060656.seq
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    28   1.1  
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...    27   2.5  
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    27   3.4  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    26   4.4  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   4.4  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.9  

>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 509 SYQPSRCTRQRAPQSY-GEAEHTDARDRRICHSRRRENHFAVNRPLTRM 652
           SY+PSR  R+ +P +Y  E  + D+R RR  H   R    A +  +  M
Sbjct: 227 SYRPSRPQREHSPGNYRKERYNVDSRPRRERHFHGRSFAHAEHHSVPNM 275


>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 473 VPEATDAVVTEVIVDADTEDVVTSCG 396
           VPE ++  V  V VD DT+D++ S G
Sbjct: 85  VPEVSELEVDRVNVDQDTKDMLKSLG 110


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 66  GCYTGARAADRSATADGRRVDNGCGRIRDANHKLGRLRSE 185
           G Y    A   S+  +GRR      +IRD   KLG L+SE
Sbjct: 291 GPYLSKIARKLSSDFEGRRQAKTVNQIRDFVSKLGSLQSE 330


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -3

Query: 575 QYVRLHHSFGEPFVVCSGLADMSGVHCVLLNIVDVPEATDAVVTEVIVDADTEDVV 408
           +YV   H  G   V CS     +G   VL  I+  PE+  +     +  AD+ DVV
Sbjct: 455 KYVNNSHGSGNTIVHCSAGVGRTGTFIVLDTILRFPESKLSGFNPSV--ADSSDVV 508



 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 47  KMINLNRLLHRRPCSRSLRNSRWS 118
           K + L  L H+R  S S RNS+WS
Sbjct: 263 KFLRLQSLEHQRLVSCSDRNSQWS 286


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 537 KGLPKAMVKPNILTHVIEGYVIPG 608
           +G+    V  NI+T +I GY++PG
Sbjct: 581 EGITNQHVGLNIITELIGGYILPG 604


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 474 INYVQEHAMYSAHISQAAAHDKGLPKAMVKPNILTHVIEGY-VIPGGGRTISR*TDLLRE 650
           I+YV  H  Y+        +DK L  ++ + + +  V + Y  +P  G+T+S+  +++ E
Sbjct: 263 ISYV--HLNYTGFSKILKKYDKTLGSSL-RESYMKRVNQAYPFLPATGKTLSKRLNIVAE 319

Query: 651 W 653
           W
Sbjct: 320 W 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,097
Number of Sequences: 5004
Number of extensions: 49579
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)