Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060656.seq
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1464 + 30339369-30340220 33 0.16
12_01_0543 - 4271380-4272218,4272258-4272873 32 0.37
07_03_0184 - 14825142-14825551,14826163-14826280 32 0.37
05_03_0214 + 10345898-10346728 32 0.37
03_04_0091 + 17241555-17241602,17241685-17241822,17241901-172421... 31 1.1
03_04_0209 + 18581667-18582155 30 1.5
12_02_0292 + 16979550-16980662,16983249-16983731 29 3.5
12_01_0500 + 3966456-3968556,3968640-3969087,3969524-3969718,396... 29 3.5
07_01_1101 + 10122804-10123758,10123872-10123910,10124072-101242... 29 3.5
05_03_0336 - 12643942-12644816,12645021-12645276,12645667-12646380 29 3.5
05_03_0305 - 12005874-12006320 29 3.5
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 29 4.6
02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-96... 29 4.6
04_02_0020 - 8610425-8610710,8610716-8611140,8611393-8611463,861... 28 6.0
01_04_0063 - 15574855-15575143,15575398-15575602,15575746-155759... 28 6.0
>06_03_1464 + 30339369-30340220
Length = 283
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -3
Query: 584 HVRQYVRLHHSFG-EPFVVCSGLADMSGVHCVLLNIVDVPEATDAV 450
H+ ++R S+ +P V SGLA + +H L ++D+PEA A+
Sbjct: 48 HLHTHIRAVRSWAHDPTSVASGLAHLDALHAALGELLDLPEAQAAL 93
>12_01_0543 - 4271380-4272218,4272258-4272873
Length = 484
Score = 32.3 bits (70), Expect = 0.37
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 356 WSCLTHLEIPRRELSQPPKRSPSST-KSVRVW 264
W IP ++L QP +R PSST KS R W
Sbjct: 433 WKTPVKSSIPAKKLEQPAQRKPSSTPKSKRAW 464
>07_03_0184 - 14825142-14825551,14826163-14826280
Length = 175
Score = 32.3 bits (70), Expect = 0.37
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 356 WSCLTHLEIPRRELSQPPKRSPSST-KSVRVW 264
W L IP ++L QP ++ PSST K +VW
Sbjct: 143 WKTLVKSSIPAKKLEQPAQKKPSSTPKPKKVW 174
>05_03_0214 + 10345898-10346728
Length = 276
Score = 32.3 bits (70), Expect = 0.37
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 356 WSCLTHLEIPRRELSQPPKRSPSSTKSVRVW 264
W L +P ++L QP +R PSS +VW
Sbjct: 226 WRTLVKSPVPAKKLEQPAQRKPSSALKSKVW 256
>03_04_0091 +
17241555-17241602,17241685-17241822,17241901-17242198,
17242281-17242513,17242632-17242827,17242911-17243032,
17243100-17243165,17243373-17243436,17243851-17244176
Length = 496
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = -1
Query: 367 RHRSGVV*HTWRYRGGS*VSHRNDLLLRQNRFASGGGGAP 248
R R G ++ YRGG S RNDL R N F+ G G P
Sbjct: 422 RGRGGGYANSGNYRGGDNFSRRNDLRNR-NEFSGRGRGPP 460
>03_04_0209 + 18581667-18582155
Length = 162
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 356 WSCLTHLEIPRRELSQPPKRSPSSTKSVRVWWRRGP 249
W IP +++ QP ++ PSST R W+ P
Sbjct: 111 WKTPVKPPIPAKKIEQPTQKKPSSTPKPRNVWKEKP 146
>12_02_0292 + 16979550-16980662,16983249-16983731
Length = 531
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 77 RRPCSRSLRNSRWSPSRQRMRPYPR 151
RRP ++S R W+P+R R+R + R
Sbjct: 503 RRPEAKSWRQHHWTPARTRLRCFTR 527
>12_01_0500 +
3966456-3968556,3968640-3969087,3969524-3969718,
3969891-3970119
Length = 990
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +2
Query: 53 INLNRLLHRRPCSRSLRNSRWS---PSRQRMRPY 145
I L +HR P ++S+R +RW P R PY
Sbjct: 761 ITLRACMHRLPTNKSVRGARWPELWPERMSAAPY 794
>07_01_1101 +
10122804-10123758,10123872-10123910,10124072-10124251,
10124841-10124951,10125448-10125560
Length = 465
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 2 GTSRHRPPWWPTSR 43
G S RPPWWPT R
Sbjct: 127 GKSPLRPPWWPTGR 140
>05_03_0336 - 12643942-12644816,12645021-12645276,12645667-12646380
Length = 614
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -3
Query: 356 WSCLTHLEIPRRELSQPPKRSPSSTKSVRVWWRRGP 249
W +P ++L QP +R PSS + W+ P
Sbjct: 563 WKKPVKSNVPAKKLEQPTQRKPSSAPKPKKVWKEKP 598
>05_03_0305 - 12005874-12006320
Length = 148
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/27 (40%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = -3
Query: 332 IPRRELSQPPKRSPSST-KSVRVWWRR 255
+P ++L QP ++ PSS KS++VW ++
Sbjct: 105 VPAKKLEQPAQKKPSSAPKSMKVWRKK 131
>02_05_0366 -
28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +3
Query: 450 HSVRSFRYINYVQEHAMYSAHISQAAAHDKGLPKAMVKPNILTHV 584
HS+R +++I AMY ++ A + GL K ++ ++L H+
Sbjct: 666 HSLREYQHIGLDWLVAMYEKRLNGILADEMGLGKTIMTISLLAHL 710
>02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-969698,
969819-971527,971563-972514,972821-973273,974303-974497
Length = 1474
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 521 SRCTRQRAPQSYGEAEHTDARDR 589
S+CT+ AP S AE T ARD+
Sbjct: 1183 SQCTKIEAPNSLASAETTSARDK 1205
>04_02_0020 -
8610425-8610710,8610716-8611140,8611393-8611463,
8611503-8611878
Length = 385
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -3
Query: 356 WSCLTHLEIPRRELSQPPKRSPSSTKSVRVWWRRGP 249
W IP ++L QP ++ P S R WR P
Sbjct: 334 WRTPVKPPIPAKKLEQPAQKKPPSAPKPRKVWREKP 369
>01_04_0063 -
15574855-15575143,15575398-15575602,15575746-15575947,
15576038-15576613,15576623-15576786,15576826-15576928,
15577259-15577847,15578056-15578372
Length = 814
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -3
Query: 356 WSCLTHLEIPRRELSQPPKRSPSSTKSVRVWWRRGP 249
W IP ++L QP ++ PSS + W+ P
Sbjct: 598 WKTPVKPPIPAKKLEQPAQKKPSSAPKPKKVWKEKP 633
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,397,147
Number of Sequences: 37544
Number of extensions: 440072
Number of successful extensions: 1527
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1526
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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