Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060656.seq
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57009| Best HMM Match : Zona_pellucida (HMM E-Value=0)              29   4.7  
SB_53789| Best HMM Match : ResIII (HMM E-Value=0.044)                  28   6.2  

>SB_57009| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 564

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 560 EAEHTDARDRRICHSRRRENHFAVNRPLTRMGLTKKTKKN 679
           + ++   RD   CH+   + H+    PLT  G T++  KN
Sbjct: 177 QGDYLQLRDPT-CHAYENKTHYIFKTPLTGCGTTRRHTKN 215


>SB_53789| Best HMM Match : ResIII (HMM E-Value=0.044)
          Length = 942

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +2

Query: 14  HRPPWWPTSRPKMINLNRLLHRRPCSRSLRNSRWSPSRQRMRPYP 148
           H P W P   P         H    ++  R ++W+  R+ +RP P
Sbjct: 429 HDPQWLPDDHPAYQEYTEATHSMGGAKGYRFNKWT-QRENIRPTP 472


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,068,451
Number of Sequences: 59808
Number of extensions: 431614
Number of successful extensions: 1485
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1485
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)